Index

Symbols

--add-to-known hpcflow-demo-workflow-go command line option hpcflow-go command line option hpcflow-workflow-WORKFLOW_REF-submit command line option --all hpcflow-config-get command line option hpcflow-demo-data-cache command line option --backup hpcflow-rechunk command line option hpcflow-workflow-WORKFLOW_REF-rechunk command line option hpcflow-workflow-WORKFLOW_REF-rechunk-parameter-base command line option hpcflow-workflow-WORKFLOW_REF-rechunk-runs command line option --cancel hpcflow-demo-workflow-go command line option hpcflow-go command line option hpcflow-workflow-WORKFLOW_REF-submit command line option --chunk-size hpcflow-rechunk command line option hpcflow-workflow-WORKFLOW_REF-rechunk command line option hpcflow-workflow-WORKFLOW_REF-rechunk-parameter-base command line option hpcflow-workflow-WORKFLOW_REF-rechunk-runs command line option --config-dir hpcflow command line option hpcflow-manage-get-config-path command line option hpcflow-manage-reset-config command line option --config-key hpcflow command line option --defaults hpcflow-config-add-scheduler command line option hpcflow-config-add-shell command line option hpcflow-config-add-shell-wsl command line option --doc hpcflow-demo-workflow-copy command line option hpcflow-demo-workflow-show command line option --element hpcflow-workflow-WORKFLOW_REF-abort-run command line option --env-source-file hpcflow-configure-env command line option --exclude-os hpcflow-submission-shell-info command line option --file hpcflow-config-get command line option hpcflow-helper-pid command line option --format hpcflow-demo-workflow-go command line option hpcflow-demo-workflow-make command line option hpcflow-go command line option hpcflow-make command line option --full hpcflow-show command line option --help hpcflow command line option --hostname hpcflow-manage-clear-cache command line option --hpcflow-version hpcflow command line option --include-execute hpcflow-workflow-WORKFLOW_REF-zip command line option hpcflow-zip command line option --include-rechunk-backups hpcflow-workflow-WORKFLOW_REF-zip command line option hpcflow-zip command line option --infile1 hpcflow-demo-software-doSomething command line option --infile2 hpcflow-demo-software-doSomething command line option --jobscripts hpcflow-workflow-WORKFLOW_REF-wait command line option --js-parallelism hpcflow-demo-workflow-go command line option hpcflow-go command line option hpcflow-workflow-WORKFLOW_REF-submit command line option --json hpcflow-config-append command line option hpcflow-config-prepend command line option hpcflow-config-set command line option hpcflow-config-update command line option hpcflow-submission-get-known command line option --legend hpcflow-show command line option --list hpcflow-demo-data command line option hpcflow-demo-workflow command line option --log hpcflow-unzip command line option hpcflow-workflow-WORKFLOW_REF-unzip command line option hpcflow-workflow-WORKFLOW_REF-zip command line option hpcflow-zip command line option --max-recent hpcflow-show command line option --metadata hpcflow-config-get command line option --name hpcflow-demo-workflow-go command line option hpcflow-demo-workflow-make command line option hpcflow-go command line option hpcflow-make command line option hpcflow-open-env-source command line option --new hpcflow-config-import command line option --no-add-to-known hpcflow-demo-workflow-go command line option hpcflow-go command line option hpcflow-workflow-WORKFLOW_REF-submit command line option --no-backup hpcflow-rechunk command line option hpcflow-workflow-WORKFLOW_REF-rechunk command line option hpcflow-workflow-WORKFLOW_REF-rechunk-parameter-base command line option hpcflow-workflow-WORKFLOW_REF-rechunk-runs command line option --no-callback hpcflow-config command line option --no-doc hpcflow-demo-workflow-copy command line option hpcflow-demo-workflow-show command line option --no-rename hpcflow-config-import command line option --no-status hpcflow-demo-workflow-go command line option hpcflow-demo-workflow-make command line option hpcflow-go command line option hpcflow-make command line option hpcflow-rechunk command line option hpcflow-workflow-WORKFLOW_REF-rechunk command line option hpcflow-workflow-WORKFLOW_REF-rechunk-parameter-base command line option hpcflow-workflow-WORKFLOW_REF-rechunk-runs command line option hpcflow-workflow-WORKFLOW_REF-submit command line option --no-syntax hpcflow-demo-workflow-show command line option --no-update hpcflow-show command line option --os-info hpcflow-submission command line option --out hpcflow-demo-software-doSomething command line option --overwrite hpcflow-demo-workflow-go command line option hpcflow-demo-workflow-make command line option hpcflow-go command line option hpcflow-make command line option hpcflow-workflow-WORKFLOW_REF-zip command line option hpcflow-zip command line option

--path hpcflow-config-init command line option hpcflow-config-open command line option hpcflow-demo-workflow-go command line option hpcflow-demo-workflow-make command line option hpcflow-go command line option hpcflow-make command line option hpcflow-open-config command line option hpcflow-open-demo-data-cache-dir command line option hpcflow-open-env-source command line option hpcflow-open-known-subs command line option hpcflow-open-log command line option hpcflow-open-user-cache-dir command line option hpcflow-open-user-cache-hostname-dir command line option hpcflow-open-user-data-dir command line option hpcflow-open-user-data-hostname-dir command line option hpcflow-open-user-runtime-dir command line option hpcflow-open-workflow command line option hpcflow-unzip command line option hpcflow-workflow-WORKFLOW_REF-unzip command line option hpcflow-workflow-WORKFLOW_REF-zip command line option hpcflow-zip command line option --print-idx hpcflow-demo-workflow-go command line option hpcflow-go command line option hpcflow-workflow-WORKFLOW_REF-submit command line option --ref-type hpcflow-cancel command line option hpcflow-open-workflow command line option hpcflow-rechunk command line option hpcflow-workflow command line option hpcflow-zip command line option --rename hpcflow-config-import command line option --run-time-info hpcflow command line option --setup hpcflow-configure-env command line option --status hpcflow-demo-workflow-go command line option hpcflow-demo-workflow-make command line option hpcflow-go command line option hpcflow-make command line option hpcflow-rechunk command line option hpcflow-workflow-WORKFLOW_REF-rechunk command line option hpcflow-workflow-WORKFLOW_REF-rechunk-parameter-base command line option hpcflow-workflow-WORKFLOW_REF-rechunk-runs command line option hpcflow-workflow-WORKFLOW_REF-submit command line option --stderr hpcflow-internal-workflow-PATH-save-parameter command line option --store hpcflow-demo-workflow-go command line option hpcflow-demo-workflow-make command line option hpcflow-go command line option hpcflow-make command line option --string hpcflow-go command line option hpcflow-make command line option --submission hpcflow-workflow-WORKFLOW_REF-abort-run command line option --syntax hpcflow-demo-workflow-show command line option --task hpcflow-workflow-WORKFLOW_REF-abort-run command line option --tasks hpcflow-demo-workflow-go command line option hpcflow-go command line option hpcflow-workflow-WORKFLOW_REF-submit command line option --timeit hpcflow command line option --timeit-file hpcflow command line option --timeout hpcflow-helper-restart command line option hpcflow-helper-run command line option hpcflow-helper-start command line option --timeout-check-interval hpcflow-helper-restart command line option hpcflow-helper-run command line option hpcflow-helper-start command line option --ts-fmt hpcflow-demo-workflow-go command line option hpcflow-demo-workflow-make command line option hpcflow-go command line option hpcflow-make command line option --ts-name-fmt hpcflow-demo-workflow-go command line option hpcflow-demo-workflow-make command line option hpcflow-go command line option hpcflow-make command line option --use-current-env hpcflow-configure-env command line option --value hpcflow-demo-software-doSomething command line option --var hpcflow-demo-workflow-go command line option hpcflow-demo-workflow-make command line option hpcflow-go command line option hpcflow-make command line option --version hpcflow command line option --wait hpcflow-demo-workflow-go command line option hpcflow-go command line option hpcflow-workflow-WORKFLOW_REF-submit command line option --watch-interval hpcflow-helper-restart command line option hpcflow-helper-run command line option hpcflow-helper-start command line option --with-config hpcflow command line option -f hpcflow-helper-pid command line option hpcflow-show command line option -i1 hpcflow-demo-software-doSomething command line option -i2 hpcflow-demo-software-doSomething command line option -j hpcflow-workflow-WORKFLOW_REF-wait command line option -l hpcflow-demo-data command line option hpcflow-demo-workflow command line option -o hpcflow-demo-software-doSomething command line option -r hpcflow-cancel command line option hpcflow-open-workflow command line option hpcflow-rechunk command line option hpcflow-show command line option hpcflow-workflow command line option hpcflow-zip command line option -v hpcflow-demo-software-doSomething command line option hpcflow-demo-workflow-go command line option hpcflow-demo-workflow-make command line option hpcflow-go command line option hpcflow-make command line option

_

_app (hpcflow.sdk.core.app_aware.AppAware attribute)

A

a (hpcflow.sdk.core.test_utils.P1_parameter_cls attribute) abort_EARs_file_name (hpcflow.app.Submission property) (hpcflow.sdk.submission.submission.Submission property) abort_EARs_file_path (hpcflow.app.Submission property) (hpcflow.sdk.submission.submission.Submission property) ABORT_EXIT_CODE (in module hpcflow.sdk.core) abort_run() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) abortable (hpcflow.app.Action attribute) (hpcflow.app.InputFileGenerator attribute) (hpcflow.app.OutputFileParser attribute) (hpcflow.sdk.core.actions.Action attribute) (hpcflow.sdk.core.command_files.InputFileGenerator attribute) (hpcflow.sdk.core.command_files.OutputFileParser attribute) aborted (hpcflow.sdk.core.enums.EARStatus attribute) AbstractFileSystem (class in hpcflow.sdk.core.types) AbstractInputValue (class in hpcflow.sdk.core.parameters) Action (class in hpcflow.app) (class in hpcflow.sdk.core.actions) action (hpcflow.app.ActionRule attribute) (hpcflow.app.ElementAction property) (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ActionRule attribute) (hpcflow.sdk.core.actions.ElementAction property) (hpcflow.sdk.core.actions.ElementActionRun property) action_idx (hpcflow.app.ElementAction property) (hpcflow.sdk.core.actions.ElementAction property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.json.JsonStoreEAR attribute) (hpcflow.sdk.persistence.types.RunMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) (hpcflow.sdk.typing.ParamSource attribute) action_runs (hpcflow.app.Element property) (hpcflow.app.ElementIteration property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property) ACTION_SCOPE_ALLOWED_KWARGS (in module hpcflow.sdk.core.actions) ActionEnvironment (class in hpcflow.app) (class in hpcflow.sdk.core.actions) ActionEnvironmentMissingNameError ActionRule (class in hpcflow.app) (class in hpcflow.sdk.core.actions) actions (hpcflow.app.Element property) (hpcflow.app.ElementIteration property) (hpcflow.app.TaskSchema attribute) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.core.task_schema.TaskSchema attribute) ActionScope (class in hpcflow.app) (class in hpcflow.sdk.core.actions) ActionScopeType (class in hpcflow.app) active (hpcflow.sdk.log.TimeIt attribute) active_jobscripts (hpcflow.sdk.typing.KnownSubmissionItem attribute) ActParameterDependence (class in hpcflow.sdk.core.types) add_default_config() (hpcflow.sdk.config.config_file.ConfigFile method) add_EAR() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) add_EARs (hpcflow.sdk.persistence.pending.PendingChanges attribute) add_elem_IDs (hpcflow.sdk.persistence.pending.PendingChanges attribute) add_elem_iter_EAR_IDs (hpcflow.sdk.persistence.pending.PendingChanges attribute) add_elem_iter_IDs (hpcflow.sdk.persistence.pending.PendingChanges attribute) add_elem_iters (hpcflow.sdk.persistence.pending.PendingChanges attribute) add_element() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) add_element_iteration() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) add_element_set() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) add_element_sets (hpcflow.sdk.persistence.pending.PendingChanges attribute) add_elements (hpcflow.sdk.persistence.pending.PendingChanges attribute) add_elements() (hpcflow.app.WorkflowTask method) (hpcflow.sdk.core.task.WorkflowTask method) add_file() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) add_file_logger() (hpcflow.sdk.log.AppLog method) add_files (hpcflow.sdk.persistence.pending.PendingChanges attribute) add_group() (hpcflow.app.Task method) (hpcflow.sdk.core.task.Task method) add_iteration() (hpcflow.app.WorkflowLoop method) (hpcflow.sdk.core.loop.WorkflowLoop method) (hpcflow.sdk.core.loop_cache.LoopCache method) add_loop() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) add_loops (hpcflow.sdk.persistence.pending.PendingChanges attribute) add_object() (hpcflow.app.CommandFilesList method) (hpcflow.app.EnvironmentsList method) (hpcflow.app.ExecutablesList method) (hpcflow.app.GroupList method) (hpcflow.app.ParametersList method) (hpcflow.app.ResourceList method) (hpcflow.app.TaskList method) (hpcflow.app.TaskSchemasList method) (hpcflow.app.TaskTemplateList method) (hpcflow.app.WorkflowLoopList method) (hpcflow.app.WorkflowTaskList method) (hpcflow.sdk.core.object_list.AppDataList method) (hpcflow.sdk.core.object_list.CommandFilesList method) (hpcflow.sdk.core.object_list.DotAccessObjectList method) (hpcflow.sdk.core.object_list.EnvironmentsList method) (hpcflow.sdk.core.object_list.ExecutablesList method) (hpcflow.sdk.core.object_list.GroupList method) (hpcflow.sdk.core.object_list.ObjectList method) (hpcflow.sdk.core.object_list.ParametersList method) (hpcflow.sdk.core.object_list.ResourceList method) (hpcflow.sdk.core.object_list.TaskList method) (hpcflow.sdk.core.object_list.TaskSchemasList method) (hpcflow.sdk.core.object_list.TaskTemplateList method) (hpcflow.sdk.core.object_list.WorkflowLoopList method) (hpcflow.sdk.core.object_list.WorkflowTaskList method) add_objects() (hpcflow.app.CommandFilesList method) (hpcflow.app.EnvironmentsList method) (hpcflow.app.ExecutablesList method) (hpcflow.app.GroupList method) (hpcflow.app.ParametersList method) (hpcflow.app.TaskList method) (hpcflow.app.TaskSchemasList method) (hpcflow.app.TaskTemplateList method) (hpcflow.app.WorkflowLoopList method) (hpcflow.app.WorkflowTaskList method) (hpcflow.sdk.core.object_list.AppDataList method) (hpcflow.sdk.core.object_list.CommandFilesList method) (hpcflow.sdk.core.object_list.DotAccessObjectList method) (hpcflow.sdk.core.object_list.EnvironmentsList method) (hpcflow.sdk.core.object_list.ExecutablesList method) (hpcflow.sdk.core.object_list.GroupList method) (hpcflow.sdk.core.object_list.ParametersList method) (hpcflow.sdk.core.object_list.TaskList method) (hpcflow.sdk.core.object_list.TaskSchemasList method) (hpcflow.sdk.core.object_list.TaskTemplateList method) (hpcflow.sdk.core.object_list.WorkflowLoopList method) (hpcflow.sdk.core.object_list.WorkflowTaskList method)

add_parameters (hpcflow.sdk.persistence.pending.PendingChanges attribute) add_scheduler() (hpcflow.sdk.config.config.Config method) add_schema() (hpcflow.sdk.core.validation.Schema method) add_set_parameter() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) add_shell() (hpcflow.sdk.config.config.Config method) add_shell_WSL() (hpcflow.sdk.config.config.Config method) add_submission() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) add_submission_part() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) add_submission_parts (hpcflow.sdk.persistence.pending.PendingChanges attribute) add_submissions (hpcflow.sdk.persistence.pending.PendingChanges attribute) add_task() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) add_task_after() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) add_task_before() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) add_tasks (hpcflow.sdk.persistence.pending.PendingChanges attribute) add_template_components (hpcflow.sdk.persistence.pending.PendingChanges attribute) add_template_components() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) add_to_known_opt() (in module hpcflow.sdk.cli_common) add_unset_parameter() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) additive_factor (hpcflow.app.ValuePerturbation attribute) (hpcflow.sdk.core.parameters.ValuePerturbation attribute) address (hpcflow.app.SubParameter attribute) (hpcflow.sdk.core.parameters.SubParameter attribute) Address (in module hpcflow.sdk.core.types) ALL_CREATE_STORE_FORMATS (in module hpcflow.sdk.persistence.discovery) all_EAR_IDs (hpcflow.app.Jobscript property) (hpcflow.app.Submission property) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.submission.Submission property) all_EARs (hpcflow.app.Jobscript property) (hpcflow.app.Submission property) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.submission.Submission property) all_iterations (hpcflow.sdk.core.types.ScriptData attribute) all_labelled_types (hpcflow.app.SchemaInput property) (hpcflow.sdk.core.parameters.SchemaInput property) all_schema_actions() (hpcflow.app.Task method) (hpcflow.sdk.core.task.Task method) all_schema_input_normalised_paths (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) all_schema_input_types (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) all_schema_inputs (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) all_schema_output_types (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) all_schema_outputs (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) ALL_SHELLS (in module hpcflow.sdk.submission.shells) all_sourced_normalised_paths (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) ALL_STORE_FORMATS (in module hpcflow.sdk.persistence.discovery) ALL_TEMPLATE_FORMATS (in module hpcflow.sdk.core) allow_non_coincident_task_sources (hpcflow.app.ElementSet attribute) (hpcflow.sdk.core.task.ElementSet attribute) ALLOWED_PARAMETERS (hpcflow.app.ResourceSpec attribute) (hpcflow.sdk.core.parameters.ResourceSpec attribute) ANY (hpcflow.app.ActionScopeType attribute) (hpcflow.app.TaskSourceType attribute) any() (hpcflow.app.ActionScope class method) (hpcflow.sdk.core.actions.ActionScope class method) AnySEAR (in module hpcflow.sdk.persistence.types) AnySElement (in module hpcflow.sdk.persistence.types) AnySElementIter (in module hpcflow.sdk.persistence.types) AnySParameter (in module hpcflow.sdk.persistence.types) AnySTask (in module hpcflow.sdk.persistence.types) API_logger (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) App (class in hpcflow.sdk.app) app (hpcflow.app.ElementParameter attribute) (hpcflow.sdk.core.element.ElementParameter attribute) (hpcflow.sdk.log.AppLog attribute) (in module hpcflow.app) app_info (hpcflow.sdk.core.types.CreationInfo attribute) (hpcflow.sdk.persistence.types.StoreCreationInfo attribute) app_invoc (hpcflow.sdk.submission.types.JobscriptHeaderArgs attribute) AppAware (class in hpcflow.sdk.core.app_aware) AppDataList (class in hpcflow.sdk.core.object_list) append() (hpcflow.sdk.config.config.Config method) append_EAR_IDs() (hpcflow.sdk.persistence.base.StoreElementIter method) (hpcflow.sdk.persistence.json.JsonStoreElementIter method) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter method) append_element_IDs() (hpcflow.sdk.persistence.base.StoreTask method) (hpcflow.sdk.persistence.json.JsonStoreTask method) (hpcflow.sdk.persistence.zarr.ZarrStoreTask method) append_items_to_ragged_array() (in module hpcflow.sdk.persistence.zarr) append_iteration_IDs() (hpcflow.sdk.persistence.base.StoreElement method) (hpcflow.sdk.persistence.json.JsonStoreElement method) (hpcflow.sdk.persistence.zarr.ZarrStoreElement method) AppLog (class in hpcflow.sdk.log) args (hpcflow.app.FileNameSpec attribute) (hpcflow.sdk.core.command_files.FileNameSpec attribute) (hpcflow.sdk.core.validation.PreparedConditionCallable property) arguments (hpcflow.app.Command attribute) (hpcflow.sdk.core.commands.Command attribute) arrays (hpcflow.sdk.persistence.types.TypeLookup attribute) artifacts_path (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) ask_pw_on_auth_exc() (in module hpcflow.sdk.persistence.utils)

B

BaseApp (class in hpcflow.sdk.app) BaseJSONLike (class in hpcflow.sdk.core.json_like) Bash (class in hpcflow.sdk.submission.shells.bash) basic_info() (hpcflow.app.TaskSchema method) (hpcflow.sdk.core.task_schema.TaskSchema method) BasicTemplateComponents (in module hpcflow.sdk.typing)

batch_update() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) bisect_slice() (in module hpcflow.sdk.core.utils) build() (hpcflow.sdk.core.cache.DependencyCache class method) (hpcflow.sdk.core.loop_cache.LoopCache class method) BuiltinSchemaParameter (class in hpcflow.sdk.core.parameters) bundle_dir (hpcflow.sdk.runtime.RunTimeInfo attribute)

C

cache_all_demo_data_files() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) cache_ctx() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) cache_demo_data_file() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) cached_load() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) callable (hpcflow.sdk.core.validation.Condition property) callback_bool() (in module hpcflow.sdk.config.callbacks) callback_file_paths() (in module hpcflow.sdk.config.callbacks) callback_lowercase() (in module hpcflow.sdk.config.callbacks) callback_scheduler_set_up() (in module hpcflow.sdk.config.callbacks) callback_supported_schedulers() (in module hpcflow.sdk.config.callbacks) callback_supported_shells() (in module hpcflow.sdk.config.callbacks) callback_update_log_console_level() (in module hpcflow.sdk.config.callbacks) callback_vars() (in module hpcflow.sdk.config.callbacks) cancel (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) cancel() (hpcflow.app.Jobscript method) (hpcflow.app.Submission method) (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.submission.jobscript.Jobscript method) (hpcflow.sdk.submission.submission.Submission method) (in module hpcflow.app) cancel_jobs() (hpcflow.app.DirectPosix method) (hpcflow.app.DirectWindows method) (hpcflow.app.QueuedScheduler method) (hpcflow.app.SGEPosix method) (hpcflow.app.SlurmPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectScheduler method) (hpcflow.sdk.submission.schedulers.direct.DirectWindows method) (hpcflow.sdk.submission.schedulers.QueuedScheduler method) (hpcflow.sdk.submission.schedulers.Scheduler method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix method) cancel_opt() (in module hpcflow.sdk.cli_common) cancelled (hpcflow.sdk.submission.enums.JobscriptElementState attribute) capitalise_first_letter() (in module hpcflow.sdk.core.utils) cast (hpcflow.app.Rule attribute) (hpcflow.sdk.core.rule.Rule attribute) (hpcflow.sdk.core.types.RuleArgs attribute) cast_data (hpcflow.sdk.core.validation.ValidatedData attribute) check_exists (hpcflow.app.Rule attribute) (hpcflow.sdk.core.rule.Rule attribute) (hpcflow.sdk.core.types.RuleArgs attribute) check_exists() (hpcflow.app.ActionRule class method) (hpcflow.sdk.core.actions.ActionRule class method) check_load_data_files() (in module hpcflow.sdk.config.callbacks) check_loop_termination() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) check_missing (hpcflow.app.Rule attribute) (hpcflow.sdk.core.rule.Rule attribute) (hpcflow.sdk.core.types.RuleArgs attribute) check_missing() (hpcflow.app.ActionRule class method) (hpcflow.sdk.core.actions.ActionRule class method) check_parameters_exist() (hpcflow.app.Workflow method) (hpcflow.sdk.core.types.ResourcePersistingWorkflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) check_valid_py_identifier() (in module hpcflow.sdk.core.utils) ChildObjectSpec (class in hpcflow.sdk.core.json_like) class_name (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) class_obj (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) clean_up (hpcflow.app.Action attribute) (hpcflow.app.OutputFileParser attribute) (hpcflow.sdk.core.actions.Action attribute) (hpcflow.sdk.core.command_files.OutputFileParser attribute) (hpcflow.sdk.persistence.types.FileDescriptor attribute) clear() (hpcflow.sdk.config.types.ConfigDescriptor method) (hpcflow.sdk.config.types.ConfigMetadata method) (hpcflow.sdk.config.types.DefaultConfiguration method) (hpcflow.sdk.config.types.InvocationDescriptor method) (hpcflow.sdk.config.types.SchedulerConfigDescriptor method) (hpcflow.sdk.config.types.SGEParallelEnvsDescriptor method) (hpcflow.sdk.config.types.ShellConfigDescriptor method) (hpcflow.sdk.config.types.SLURMPartitionsDescriptor method) (hpcflow.sdk.core.loop_cache.LoopIndex method) (hpcflow.sdk.core.types.ActParameterDependence method) (hpcflow.sdk.core.types.CreationInfo method) (hpcflow.sdk.core.types.DependentDescriptor method) (hpcflow.sdk.core.types.ElementDescriptor method) (hpcflow.sdk.core.types.IterableParam method) (hpcflow.sdk.core.types.JobscriptSubmissionFailureArgs method) (hpcflow.sdk.core.types.LabelInfo method) (hpcflow.sdk.core.types.LabellingDescriptor method) (hpcflow.sdk.core.types.MultiplicityDescriptor method) (hpcflow.sdk.core.types.ParameterDependence method) (hpcflow.sdk.core.types.ParentPath method) (hpcflow.sdk.core.types.Pending method) (hpcflow.sdk.core.types.RelevantData method) (hpcflow.sdk.core.types.RepeatsDescriptor method) (hpcflow.sdk.core.types.ResourceSpecArgs method) (hpcflow.sdk.core.types.RuleArgs method) (hpcflow.sdk.core.types.SchemaInputKwargs method) (hpcflow.sdk.core.types.ScriptData method) (hpcflow.sdk.core.types.SiblingPath method) (hpcflow.sdk.core.types.UpdatePath method) (hpcflow.sdk.core.types.WorkflowTemplateTaskData method) (hpcflow.sdk.persistence.types.ElemMeta method) (hpcflow.sdk.persistence.types.EncodedStoreParameter method) (hpcflow.sdk.persistence.types.File method) (hpcflow.sdk.persistence.types.FileDescriptor method) (hpcflow.sdk.persistence.types.IterMeta method) (hpcflow.sdk.persistence.types.LoopDescriptor method) (hpcflow.sdk.persistence.types.Metadata method) (hpcflow.sdk.persistence.types.PersistenceCache method) (hpcflow.sdk.persistence.types.RunMeta method) (hpcflow.sdk.persistence.types.StoreCreationInfo method) (hpcflow.sdk.persistence.types.TaskMeta method) (hpcflow.sdk.persistence.types.TemplateMeta method) (hpcflow.sdk.persistence.types.TypeLookup method) (hpcflow.sdk.persistence.types.ZarrAttrsDict method) (hpcflow.sdk.submission.types.JobScriptCreationArguments method) (hpcflow.sdk.submission.types.JobScriptDescriptor method) (hpcflow.sdk.submission.types.JobscriptHeaderArgs method) (hpcflow.sdk.submission.types.ResolvedDependencies method) (hpcflow.sdk.submission.types.SchedulerRef method) (hpcflow.sdk.submission.types.SubmissionPart method) (hpcflow.sdk.typing.KnownSubmission method) (hpcflow.sdk.typing.KnownSubmissionItem method) (hpcflow.sdk.typing.ParamSource method) (hpcflow.sdk.typing.TemplateComponents method) clear_demo_data_cache_dir() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) clear_helper() (in module hpcflow.sdk.helper.helper) clear_known_submissions_file() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) clear_user_cache_dir() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) clear_user_cache_hostname_dir() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) clear_user_runtime_dir() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) cli (hpcflow.sdk.app.App attribute) (hpcflow.sdk.app.BaseApp attribute) CLI_exception_wrapper_gen() (in module hpcflow.sdk.config.cli) CLI_format() (hpcflow.sdk.core.test_utils.P1_parameter_cls method) (hpcflow.sdk.core.test_utils.P1_sub_parameter_cls method) CLI_format_group() (hpcflow.sdk.core.test_utils.P1_parameter_cls static method) CLI_logger (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) CLI_parse() (hpcflow.sdk.core.test_utils.P1_parameter_cls class method) close() (hpcflow.sdk.persistence.store_resource.JSONFileStoreResource method) (hpcflow.sdk.persistence.store_resource.StoreResource method) (hpcflow.sdk.persistence.store_resource.ZarrAttrsStoreResource method) CMD_IDX hpcflow-internal-workflow-PATH-save-parameter command line option colour (hpcflow.sdk.core.enums.EARStatus attribute) (hpcflow.sdk.submission.enums.JobscriptElementState attribute) Command (class in hpcflow.app) (class in hpcflow.sdk.core.commands) command (hpcflow.app.ActionRule attribute) (hpcflow.app.Command attribute) (hpcflow.app.ExecutableInstance attribute) (hpcflow.sdk.core.actions.ActionRule attribute) (hpcflow.sdk.core.commands.Command attribute) (hpcflow.sdk.core.environment.ExecutableInstance attribute) command_file_sources (hpcflow.sdk.config.config.Config property) (hpcflow.sdk.config.types.ConfigDescriptor attribute) command_files (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) (hpcflow.sdk.typing.TemplateComponents attribute) CommandFilesList (class in hpcflow.app) (class in hpcflow.sdk.core.object_list) commands (hpcflow.app.Action attribute) (hpcflow.sdk.core.actions.Action attribute) (hpcflow.sdk.core.types.ActParameterDependence attribute) (hpcflow.sdk.core.types.ParameterDependence attribute) commands_idx (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.json.JsonStoreEAR attribute) (hpcflow.sdk.persistence.types.RunMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) commit_all() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_EAR_ends (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_EAR_ends() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_EAR_skips (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_EAR_skips() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_EAR_starts (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_EAR_starts() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_EAR_submission_indices (hpcflow.sdk.persistence.pending.CommitResourceMap attribute)

commit_EAR_submission_indices() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_EARs (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_EARs() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_EARs_initialised (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_EARs_initialised() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_elem_IDs (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_elem_IDs() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_elem_iter_EAR_IDs (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_elem_iter_EAR_IDs() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_elem_iter_IDs (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_elem_iter_IDs() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_elem_iters (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_elem_iters() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_element_sets (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_element_sets() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_elements (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_elements() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_files (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_files() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_js_metadata (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_js_metadata() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_loop_indices (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_loop_indices() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_loop_num_iters (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_loop_num_iters() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_loop_parents (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_loop_parents() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_loops (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_loops() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_param_sources (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_param_sources() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_parameters (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_parameters() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_submission_parts (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_submission_parts() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_submissions (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_submissions() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_tasks (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_tasks() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_template_components (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_template_components() (hpcflow.sdk.persistence.pending.PendingChanges method) CommitResourceMap (class in hpcflow.sdk.persistence.pending) compose_commands() (hpcflow.app.ElementActionRun method) (hpcflow.sdk.core.actions.ElementActionRun method) compose_jobscript() (hpcflow.app.Jobscript method) (hpcflow.sdk.submission.jobscript.Jobscript method) compose_source() (hpcflow.app.Action method) (hpcflow.app.InputFileGenerator method) (hpcflow.app.OutputFileParser method) (hpcflow.sdk.core.actions.Action method) (hpcflow.sdk.core.command_files.InputFileGenerator method) (hpcflow.sdk.core.command_files.OutputFileParser method) conda_prefix (hpcflow.sdk.runtime.RunTimeInfo attribute) Condition (class in hpcflow.sdk.core.validation) condition (hpcflow.app.Rule attribute) (hpcflow.sdk.core.rule.Rule attribute) (hpcflow.sdk.core.types.RuleArgs attribute) (hpcflow.sdk.core.validation.Rule property) Config (class in hpcflow.sdk.config.config) config (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) (hpcflow.sdk.config.types.DefaultConfiguration attribute) config_dir (hpcflow.sdk.submission.types.JobscriptHeaderArgs attribute) config_directory (hpcflow.sdk.config.config.Config property) (hpcflow.sdk.config.types.ConfigMetadata attribute) config_file_contents (hpcflow.sdk.config.config.Config property) (hpcflow.sdk.config.types.ConfigMetadata attribute) config_file_name (hpcflow.sdk.config.config.Config property) (hpcflow.sdk.config.types.ConfigMetadata attribute) config_file_path (hpcflow.sdk.config.config.Config property) (hpcflow.sdk.config.types.ConfigMetadata attribute) config_invoc_key (hpcflow.sdk.submission.types.JobscriptHeaderArgs attribute) config_key (hpcflow.sdk.config.config.Config property) (hpcflow.sdk.config.types.ConfigMetadata attribute) config_logger (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) config_options (hpcflow.sdk.app.App attribute) (hpcflow.sdk.app.BaseApp attribute) config_schemas (hpcflow.sdk.config.config.Config property) (hpcflow.sdk.config.types.ConfigMetadata attribute) ConfigChangeFileUpdateError ConfigChangeInvalidError ConfigChangeInvalidJSONError ConfigChangePopIndexError ConfigChangeTypeInvalidError ConfigChangeValidationError ConfigDefaultValidationError ConfigDescriptor (class in hpcflow.sdk.config.types) ConfigDict (in module hpcflow.sdk.config.types) ConfigError ConfigFile (class in hpcflow.sdk.config.config_file) ConfigFileInvocationIncompatibleError ConfigFileInvocationUnknownMatchKey ConfigFileValidationError ConfigInvocationKeyNotFoundError ConfigItemAlreadyUnsetError ConfigItemCallbackError ConfigMetadata (class in hpcflow.sdk.config.types) ConfigNonConfigurableError ConfigOptions (class in hpcflow.sdk.config.config) ConfigUnknownItemError ConfigUnknownOverrideError configure_env() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) ConfigValidationError console_handler (hpcflow.sdk.log.AppLog attribute) ContainerKeyError contents (hpcflow.app.InputFile property) (hpcflow.app.InputFileGeneratorSource property) (hpcflow.app.OutputFileParserSource property) (hpcflow.sdk.config.config_file.ConfigFile property) (hpcflow.sdk.core.command_files.InputFile property) (hpcflow.sdk.core.command_files.InputFileGeneratorSource property) (hpcflow.sdk.core.command_files.OutputFileParserSource property) (hpcflow.sdk.persistence.types.FileDescriptor attribute) ContextT (in module hpcflow.sdk.persistence.base) copy() (hpcflow.app.Workflow method) (hpcflow.sdk.config.types.ConfigDescriptor method) (hpcflow.sdk.config.types.ConfigMetadata method) (hpcflow.sdk.config.types.DefaultConfiguration method) (hpcflow.sdk.config.types.InvocationDescriptor method) (hpcflow.sdk.config.types.SchedulerConfigDescriptor method) (hpcflow.sdk.config.types.SGEParallelEnvsDescriptor method) (hpcflow.sdk.config.types.ShellConfigDescriptor method) (hpcflow.sdk.config.types.SLURMPartitionsDescriptor method) (hpcflow.sdk.core.loop_cache.LoopIndex method) (hpcflow.sdk.core.types.ActParameterDependence method) (hpcflow.sdk.core.types.CreationInfo method) (hpcflow.sdk.core.types.DependentDescriptor method) (hpcflow.sdk.core.types.ElementDescriptor method) (hpcflow.sdk.core.types.IterableParam method) (hpcflow.sdk.core.types.JobscriptSubmissionFailureArgs method) (hpcflow.sdk.core.types.LabelInfo method) (hpcflow.sdk.core.types.LabellingDescriptor method) (hpcflow.sdk.core.types.MultiplicityDescriptor method) (hpcflow.sdk.core.types.ParameterDependence method) (hpcflow.sdk.core.types.ParentPath method) (hpcflow.sdk.core.types.Pending method) (hpcflow.sdk.core.types.RelevantData method) (hpcflow.sdk.core.types.RepeatsDescriptor method) (hpcflow.sdk.core.types.ResourceSpecArgs method) (hpcflow.sdk.core.types.RuleArgs method) (hpcflow.sdk.core.types.SchemaInputKwargs method) (hpcflow.sdk.core.types.ScriptData method) (hpcflow.sdk.core.types.SiblingPath method) (hpcflow.sdk.core.types.UpdatePath method) (hpcflow.sdk.core.types.WorkflowTemplateTaskData method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.types.ElemMeta method) (hpcflow.sdk.persistence.types.EncodedStoreParameter method) (hpcflow.sdk.persistence.types.File method) (hpcflow.sdk.persistence.types.FileDescriptor method) (hpcflow.sdk.persistence.types.IterMeta method) (hpcflow.sdk.persistence.types.LoopDescriptor method) (hpcflow.sdk.persistence.types.Metadata method) (hpcflow.sdk.persistence.types.PersistenceCache method) (hpcflow.sdk.persistence.types.RunMeta method) (hpcflow.sdk.persistence.types.StoreCreationInfo method) (hpcflow.sdk.persistence.types.TaskMeta method) (hpcflow.sdk.persistence.types.TemplateMeta method) (hpcflow.sdk.persistence.types.TypeLookup method) (hpcflow.sdk.persistence.types.ZarrAttrsDict method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) (hpcflow.sdk.submission.types.JobScriptCreationArguments method) (hpcflow.sdk.submission.types.JobScriptDescriptor method) (hpcflow.sdk.submission.types.JobscriptHeaderArgs method) (hpcflow.sdk.submission.types.ResolvedDependencies method) (hpcflow.sdk.submission.types.SchedulerRef method) (hpcflow.sdk.submission.types.SubmissionPart method) (hpcflow.sdk.typing.KnownSubmission method) (hpcflow.sdk.typing.KnownSubmissionItem method) (hpcflow.sdk.typing.ParamSource method) (hpcflow.sdk.typing.TemplateComponents method) copy_demo_data() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) copy_demo_workflow() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) copy_non_persistent() (hpcflow.app.ResourceSpec method) (hpcflow.sdk.core.parameters.ResourceSpec method) create (hpcflow.sdk.persistence.base.PersistentStoreFeatures attribute) create_time (hpcflow.sdk.core.types.CreationInfo attribute) (hpcflow.sdk.persistence.types.StoreCreationInfo attribute) creation_info (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) (hpcflow.sdk.persistence.types.Metadata attribute) (hpcflow.sdk.persistence.types.ZarrAttrsDict attribute) CreationInfo (class in hpcflow.sdk.core.types) current_timestamp() (in module hpcflow.sdk.core.utils) custom_CLI_format() (hpcflow.sdk.core.test_utils.P1_parameter_cls method) custom_CLI_format_prep() (hpcflow.sdk.core.test_utils.P1_parameter_cls method)

D

d (hpcflow.sdk.core.test_utils.P1_parameter_cls attribute) data (hpcflow.sdk.config.config_file.ConfigFile property) (hpcflow.sdk.core.types.RelevantData attribute) (hpcflow.sdk.persistence.base.StoreParameter attribute) (hpcflow.sdk.persistence.types.EncodedStoreParameter attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreParameter attribute) data_idx (hpcflow.app.ElementActionRun property) (hpcflow.app.ElementIteration property) (hpcflow.app.ElementParameter property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.core.element.ElementParameter property) (hpcflow.sdk.core.loop_cache.LoopCache attribute) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.base.StoreElementIter attribute) (hpcflow.sdk.persistence.json.JsonStoreEAR attribute) (hpcflow.sdk.persistence.json.JsonStoreElementIter attribute) (hpcflow.sdk.persistence.types.IterMeta attribute) (hpcflow.sdk.persistence.types.RunMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter attribute) data_idx_is_set (hpcflow.app.ElementParameter property) (hpcflow.sdk.core.element.ElementParameter property) data_rt (hpcflow.sdk.config.config_file.ConfigFile property) DataIndex (in module hpcflow.sdk.typing) decode() (hpcflow.sdk.persistence.base.StoreEAR class method) (hpcflow.sdk.persistence.base.StoreElement class method) (hpcflow.sdk.persistence.base.StoreElementIter class method) (hpcflow.sdk.persistence.base.StoreParameter class method) (hpcflow.sdk.persistence.base.StoreTask class method) (hpcflow.sdk.persistence.json.JsonStoreEAR class method) (hpcflow.sdk.persistence.json.JsonStoreElement class method) (hpcflow.sdk.persistence.json.JsonStoreElementIter class method) (hpcflow.sdk.persistence.json.JsonStoreTask class method) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR class method) (hpcflow.sdk.persistence.zarr.ZarrStoreElement class method) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter class method) (hpcflow.sdk.persistence.zarr.ZarrStoreParameter class method) (hpcflow.sdk.persistence.zarr.ZarrStoreTask class method) decorator() (hpcflow.sdk.log.TimeIt class method) DEFAULT (hpcflow.app.InputSourceType attribute) default (hpcflow.app.Parameters attribute) (hpcflow.sdk.core.task.Parameters attribute) default() (hpcflow.app.InputSource class method) (hpcflow.sdk.core.parameters.InputSource class method) DEFAULT_ARRAY_ITEM_VAR (hpcflow.app.QueuedScheduler attribute) (hpcflow.app.SGEPosix attribute) (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.QueuedScheduler attribute) (hpcflow.sdk.submission.schedulers.sge.SGEPosix attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute) DEFAULT_ARRAY_SWITCH (hpcflow.app.QueuedScheduler attribute) (hpcflow.app.SGEPosix attribute) (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.QueuedScheduler attribute) (hpcflow.sdk.submission.schedulers.sge.SGEPosix attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute) default_config (hpcflow.sdk.config.config.ConfigOptions attribute) DEFAULT_CONFIG (in module hpcflow.sdk.config.config) DEFAULT_CWD_SWITCH (hpcflow.app.SGEPosix attribute) (hpcflow.sdk.submission.schedulers.sge.SGEPosix attribute) DEFAULT_DEL_CMD (hpcflow.app.QueuedScheduler attribute) (hpcflow.app.SGEPosix attribute) (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.QueuedScheduler attribute) (hpcflow.sdk.submission.schedulers.sge.SGEPosix attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute) default_directory (hpcflow.sdk.config.config.ConfigOptions attribute) DEFAULT_EXE (hpcflow.sdk.submission.shells.base.Shell attribute) (hpcflow.sdk.submission.shells.bash.Bash attribute) (hpcflow.sdk.submission.shells.bash.WSLBash attribute) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell attribute) DEFAULT_JS_CMD (hpcflow.app.QueuedScheduler attribute) (hpcflow.app.SGEPosix attribute) (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.QueuedScheduler attribute) (hpcflow.sdk.submission.schedulers.sge.SGEPosix attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute) default_known_configs_dir (hpcflow.sdk.config.config.ConfigOptions attribute) DEFAULT_LOG_CONSOLE_LEVEL (hpcflow.sdk.log.AppLog attribute) DEFAULT_LOG_FILE_LEVEL (hpcflow.sdk.log.AppLog attribute) DEFAULT_LOGIN_NODE_MATCH (hpcflow.app.QueuedScheduler attribute) (hpcflow.app.SGEPosix attribute) (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.QueuedScheduler attribute) (hpcflow.sdk.submission.schedulers.sge.SGEPosix attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute) DEFAULT_LOGIN_NODES_CMD (hpcflow.app.QueuedScheduler attribute) (hpcflow.app.SGEPosix attribute) (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.QueuedScheduler attribute) (hpcflow.sdk.submission.schedulers.sge.SGEPosix attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute) default_scheduler (hpcflow.sdk.config.config.Config property) (hpcflow.sdk.config.types.ConfigDescriptor attribute) DEFAULT_SHEBANG_ARGS (hpcflow.app.DirectPosix attribute) (hpcflow.app.DirectWindows attribute) (hpcflow.app.QueuedScheduler attribute) (hpcflow.app.SGEPosix attribute) (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.direct.DirectPosix attribute) (hpcflow.sdk.submission.schedulers.direct.DirectScheduler attribute) (hpcflow.sdk.submission.schedulers.direct.DirectWindows attribute) (hpcflow.sdk.submission.schedulers.QueuedScheduler attribute) (hpcflow.sdk.submission.schedulers.Scheduler attribute) (hpcflow.sdk.submission.schedulers.sge.SGEPosix attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute) default_shell (hpcflow.sdk.config.config.Config property) (hpcflow.sdk.config.types.ConfigDescriptor attribute) DEFAULT_SHELL_ARGS (hpcflow.app.DirectPosix attribute) (hpcflow.app.DirectWindows attribute) (hpcflow.app.QueuedScheduler attribute) (hpcflow.app.SGEPosix attribute) (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.direct.DirectPosix attribute) (hpcflow.sdk.submission.schedulers.direct.DirectScheduler attribute) (hpcflow.sdk.submission.schedulers.direct.DirectWindows attribute) (hpcflow.sdk.submission.schedulers.QueuedScheduler attribute) (hpcflow.sdk.submission.schedulers.Scheduler attribute) (hpcflow.sdk.submission.schedulers.sge.SGEPosix attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute) DEFAULT_SHELL_EXECUTABLE (hpcflow.app.DirectPosix attribute) (hpcflow.app.DirectWindows attribute) (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.direct.DirectPosix attribute) (hpcflow.sdk.submission.schedulers.direct.DirectWindows attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute)

DEFAULT_SHELL_NAMES (in module hpcflow.sdk.submission.shells) DEFAULT_SHOW_CMD (hpcflow.app.QueuedScheduler attribute) (hpcflow.app.SGEPosix attribute) (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.QueuedScheduler attribute) (hpcflow.sdk.submission.schedulers.sge.SGEPosix attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute) DEFAULT_STORE_FORMAT (in module hpcflow.sdk.persistence.defaults) DEFAULT_SUBMIT_CMD (hpcflow.app.QueuedScheduler attribute) (hpcflow.app.SGEPosix attribute) (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.QueuedScheduler attribute) (hpcflow.sdk.submission.schedulers.sge.SGEPosix attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute) default_value (hpcflow.app.SchemaInput property) (hpcflow.sdk.core.parameters.SchemaInput property) (hpcflow.sdk.core.types.LabelInfo attribute) (hpcflow.sdk.core.types.LabellingDescriptor attribute) DEFAULT_WSL_EXE (hpcflow.sdk.submission.shells.bash.WSLBash attribute) DefaultConfiguration (class in hpcflow.sdk.config.types) defaults (hpcflow.sdk.config.types.SchedulerConfigDescriptor attribute) (hpcflow.sdk.config.types.ShellConfigDescriptor attribute) defined_input_types (hpcflow.app.ElementSet property) (hpcflow.app.Task property) (hpcflow.sdk.core.task.ElementSet property) (hpcflow.sdk.core.task.Task property) delete() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) delete_no_confirm() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) deleted (hpcflow.sdk.typing.KnownSubmissionItem attribute) demo_data_cache_dir (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) demo_data_dir (hpcflow.sdk.app.App attribute) (hpcflow.sdk.app.BaseApp attribute) (hpcflow.sdk.config.config.Config property) demo_data_manifest_dir (hpcflow.sdk.app.App attribute) (hpcflow.sdk.app.BaseApp attribute) demo_data_manifest_file (hpcflow.sdk.config.config.Config attribute) dependencies (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.types.JobScriptCreationArguments attribute) (hpcflow.sdk.submission.types.JobScriptDescriptor attribute) DependencyCache (class in hpcflow.sdk.core.cache) DependentDescriptor (class in hpcflow.sdk.core.types) description (hpcflow.sdk.app.App attribute) (hpcflow.sdk.app.BaseApp attribute) DESTINATION hpcflow-demo-data-copy command line option hpcflow-demo-workflow-copy command line option dict_key_attr (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) dict_val_attr (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) dict_values_process_flat() (in module hpcflow.sdk.core.utils) dir_diff (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ElementActionRun property) dir_name (hpcflow.app.Element property) (hpcflow.app.Task property) (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.task.Task property) (hpcflow.sdk.core.task.WorkflowTask property) direct_stderr_file_name (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) direct_stderr_path (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) direct_stdout_file_name (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) direct_stdout_path (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) direct_win_pid_file_name (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) direct_win_pid_file_path (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) directory (hpcflow.sdk.config.config_file.ConfigFile attribute) directory_env_var (hpcflow.sdk.config.config.ConfigOptions attribute) DirectPosix (class in hpcflow.app) (class in hpcflow.sdk.submission.schedulers.direct) DirectScheduler (class in hpcflow.sdk.submission.schedulers.direct) DirectWindows (class in hpcflow.app) (class in hpcflow.sdk.submission.schedulers.direct) DISTRIBUTED (hpcflow.sdk.core.enums.ParallelMode attribute) doc (hpcflow.app.Environment attribute) (hpcflow.app.FileSpec attribute) (hpcflow.app.Rule attribute) (hpcflow.app.TaskSchema attribute) (hpcflow.app.WorkflowTemplate attribute) (hpcflow.sdk.core.command_files.FileSpec attribute) (hpcflow.sdk.core.environment.Environment attribute) (hpcflow.sdk.core.rule.Rule attribute) (hpcflow.sdk.core.task_schema.TaskSchema attribute) (hpcflow.sdk.core.types.RuleArgs attribute) (hpcflow.sdk.core.workflow.WorkflowTemplate attribute) docs_import_conv (hpcflow.sdk.app.App attribute) (hpcflow.sdk.app.BaseApp attribute) docs_url (hpcflow.sdk.app.App attribute) (hpcflow.sdk.app.BaseApp attribute) documentation (hpcflow.app.Environment property) (hpcflow.app.FileSpec property) (hpcflow.sdk.core.command_files.FileSpec property) (hpcflow.sdk.core.environment.Environment property) DotAccessAttributeError DotAccessObjectList (class in hpcflow.sdk.core.object_list) downstream_tasks (hpcflow.app.WorkflowLoop property) (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.loop.WorkflowLoop property) (hpcflow.sdk.core.task.WorkflowTask property) dst_path (hpcflow.sdk.persistence.types.FileDescriptor attribute) dump_to_HDF5_group() (hpcflow.app.ParameterValue method) (hpcflow.sdk.core.parameters.ParameterValue method) (hpcflow.sdk.core.test_utils.P1_parameter_cls method) (hpcflow.sdk.core.test_utils.P1_sub_parameter_cls method) (hpcflow.sdk.core.test_utils.P1_sub_parameter_cls_2 method) DuplicateExecutableError

E

e (hpcflow.sdk.core.test_utils.P1_sub_parameter_cls attribute) EAR_cache (hpcflow.sdk.persistence.base.PersistentStore property) (hpcflow.sdk.persistence.json.JSONPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore property) EAR_file_name (hpcflow.sdk.submission.types.JobscriptHeaderArgs attribute) EAR_ID hpcflow-internal-workflow-PATH-check-loop command line option hpcflow-internal-workflow-PATH-get-ear-skipped command line option hpcflow-internal-workflow-PATH-save-parameter command line option hpcflow-internal-workflow-PATH-set-ear-end command line option hpcflow-internal-workflow-PATH-set-ear-skip command line option hpcflow-internal-workflow-PATH-set-ear-start command line option hpcflow-internal-workflow-PATH-write-commands command line option EAR_ID (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.types.JobScriptCreationArguments attribute) (hpcflow.sdk.typing.ParamSource attribute) EAR_ID_file_name (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) EAR_ID_file_path (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) EAR_IDs (hpcflow.app.ElementIteration property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.persistence.base.StoreElementIter attribute) (hpcflow.sdk.persistence.json.JsonStoreElementIter attribute) (hpcflow.sdk.persistence.types.IterMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter attribute) EAR_IDs_flat (hpcflow.app.ElementIteration property) (hpcflow.sdk.core.element.ElementIteration property) EAR_parallelism (hpcflow.sdk.persistence.base.PersistentStoreFeatures attribute) EARs (hpcflow.sdk.persistence.types.PersistenceCache attribute) EARs_by_elements (hpcflow.app.Submission property) (hpcflow.sdk.submission.submission.Submission property) EARs_initialised (hpcflow.app.ElementIteration property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.persistence.base.StoreElementIter attribute) (hpcflow.sdk.persistence.json.JsonStoreElementIter attribute) (hpcflow.sdk.persistence.types.IterMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter attribute) EARStatus (class in hpcflow.sdk.core.enums) edit (hpcflow.sdk.persistence.base.PersistentStoreFeatures attribute) elem_elem_dependencies (hpcflow.sdk.core.cache.DependencyCache attribute) elem_elem_dependents (hpcflow.sdk.core.cache.DependencyCache attribute) elem_elem_dependents_rec (hpcflow.sdk.core.cache.DependencyCache attribute) elem_iter_dependencies (hpcflow.sdk.core.cache.DependencyCache attribute) elem_iter_ID (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.json.JsonStoreEAR attribute) (hpcflow.sdk.persistence.types.RunMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) elem_iter_IDs (hpcflow.app.ElementSet property) (hpcflow.sdk.core.task.ElementSet property) Element (class in hpcflow.app) (class in hpcflow.sdk.core.element) element (hpcflow.app.ElementAction property) (hpcflow.app.ElementActionRun property) (hpcflow.app.ElementIteration property) (hpcflow.app.ElementParameter attribute) (hpcflow.sdk.core.actions.ElementAction property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.core.element.ElementParameter attribute) element_action (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ElementActionRun property) element_cache (hpcflow.sdk.persistence.base.PersistentStore property) (hpcflow.sdk.persistence.json.JSONPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore property) element_dependents (hpcflow.sdk.core.loop_cache.LoopCache attribute) element_ID (hpcflow.sdk.persistence.base.StoreElementIter attribute) (hpcflow.sdk.persistence.json.JsonStoreElementIter attribute) (hpcflow.sdk.persistence.types.IterMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter attribute) element_IDs (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.task.WorkflowTask property) (hpcflow.sdk.persistence.base.StoreTask attribute) (hpcflow.sdk.persistence.json.JsonStoreTask attribute) (hpcflow.sdk.persistence.types.TaskMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreTask attribute) element_idx (hpcflow.sdk.typing.ParamSource attribute) element_iter_cache (hpcflow.sdk.persistence.base.PersistentStore property) (hpcflow.sdk.persistence.json.JSONPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore property) element_iteration (hpcflow.app.ElementAction property) (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ElementAction property) (hpcflow.sdk.core.actions.ElementActionRun property) element_iterations (hpcflow.app.ElementSet property) (hpcflow.sdk.core.task.ElementSet property) element_iters (hpcflow.app.InputSource attribute) (hpcflow.sdk.core.parameters.InputSource attribute) (hpcflow.sdk.persistence.types.PersistenceCache attribute) element_local_idx_range (hpcflow.app.ElementSet property) (hpcflow.sdk.core.task.ElementSet property) element_run_dir_file_name (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) element_run_dir_file_path (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) element_run_dirs_file_path (hpcflow.sdk.submission.types.JobscriptHeaderArgs attribute) element_set (hpcflow.app.Element property) (hpcflow.app.ElementPropagation property) (hpcflow.app.ResourceList property) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.object_list.ResourceList property) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.task.ElementPropagation property) element_set_idx (hpcflow.app.Element property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.typing.ParamSource attribute) element_sets (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) (hpcflow.sdk.core.types.WorkflowTemplateTaskData attribute) ElementAction (class in hpcflow.app) (class in hpcflow.sdk.core.actions) ElementActionRun (class in hpcflow.app) (class in hpcflow.sdk.core.actions) ElementDescriptor (class in hpcflow.sdk.core.types) ElementFilter (class in hpcflow.app) (class in hpcflow.sdk.core.element) ElementGroup (class in hpcflow.app) (class in hpcflow.sdk.core.element) ElementInputFiles (class in hpcflow.app) (class in hpcflow.sdk.core.element) ElementInputs (class in hpcflow.app) (class in hpcflow.sdk.core.element) ElementIteration (class in hpcflow.app) (class in hpcflow.sdk.core.element) ElementOutputFiles (class in hpcflow.app) (class in hpcflow.sdk.core.element) ElementOutputs (class in hpcflow.app) (class in hpcflow.sdk.core.element) ElementParameter (class in hpcflow.app) (class in hpcflow.sdk.core.element) ElementPropagation (class in hpcflow.app) (class in hpcflow.sdk.core.task) ElementRepeats (class in hpcflow.app) (class in hpcflow.sdk.core.element) ElementResources (class in hpcflow.app) (class in hpcflow.sdk.core.element) Elements (class in hpcflow.app) (class in hpcflow.sdk.core.task)

elements (hpcflow.app.ElementSet property) (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.cache.DependencyCache attribute) (hpcflow.sdk.core.loop_cache.LoopCache attribute) (hpcflow.sdk.core.task.ElementSet property) (hpcflow.sdk.core.task.WorkflowTask property) (hpcflow.sdk.persistence.types.Metadata attribute) (hpcflow.sdk.persistence.types.PersistenceCache attribute) (hpcflow.sdk.submission.types.JobScriptCreationArguments attribute) (hpcflow.sdk.submission.types.JobScriptDescriptor attribute) elements() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) ElementSet (class in hpcflow.app) (class in hpcflow.sdk.core.task) ElemMeta (class in hpcflow.sdk.persistence.types) encode() (hpcflow.sdk.persistence.base.StoreEAR method) (hpcflow.sdk.persistence.base.StoreElement method) (hpcflow.sdk.persistence.base.StoreElementIter method) (hpcflow.sdk.persistence.base.StoreParameter method) (hpcflow.sdk.persistence.base.StoreTask method) (hpcflow.sdk.persistence.json.JsonStoreEAR method) (hpcflow.sdk.persistence.json.JsonStoreElement method) (hpcflow.sdk.persistence.json.JsonStoreElementIter method) (hpcflow.sdk.persistence.json.JsonStoreTask method) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR method) (hpcflow.sdk.persistence.zarr.ZarrStoreElement method) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter method) (hpcflow.sdk.persistence.zarr.ZarrStoreParameter method) (hpcflow.sdk.persistence.zarr.ZarrStoreTask method) EncodedStoreParameter (class in hpcflow.sdk.persistence.types) end_time (hpcflow.app.ElementActionRun property) (hpcflow.app.Jobscript property) (hpcflow.app.Submission property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.json.JsonStoreEAR attribute) (hpcflow.sdk.persistence.types.RunMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.submission.Submission property) (hpcflow.sdk.typing.KnownSubmission attribute) (hpcflow.sdk.typing.KnownSubmissionItem attribute) end_time_obj (hpcflow.sdk.typing.KnownSubmissionItem attribute) ensure_element_sets() (hpcflow.app.ElementSet class method) (hpcflow.sdk.core.task.ElementSet class method) ensure_in() (in module hpcflow.sdk.core.utils) ensure_input_sources() (hpcflow.app.WorkflowTask method) (hpcflow.sdk.core.task.WorkflowTask method) env_preset (hpcflow.app.ElementSet attribute) (hpcflow.sdk.core.task.ElementSet attribute) env_presets (hpcflow.app.WorkflowTemplate attribute) (hpcflow.sdk.core.workflow.WorkflowTemplate attribute) env_setup (hpcflow.sdk.submission.types.JobscriptHeaderArgs attribute) env_spec (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ElementActionRun property) Environment (class in hpcflow.app) (class in hpcflow.sdk.core.environment) environment (hpcflow.app.ActionEnvironment attribute) (hpcflow.app.Executable property) (hpcflow.app.ExecutablesList attribute) (hpcflow.app.InputFileGenerator attribute) (hpcflow.app.OutputFileParser attribute) (hpcflow.sdk.core.actions.ActionEnvironment attribute) (hpcflow.sdk.core.command_files.InputFileGenerator attribute) (hpcflow.sdk.core.command_files.OutputFileParser attribute) (hpcflow.sdk.core.environment.Executable property) (hpcflow.sdk.core.object_list.ExecutablesList attribute) environment_presets (hpcflow.app.TaskSchema attribute) (hpcflow.sdk.core.task_schema.TaskSchema attribute) environment_setup (hpcflow.sdk.config.types.InvocationDescriptor attribute) environment_sources (hpcflow.sdk.config.config.Config property) (hpcflow.sdk.config.types.ConfigDescriptor attribute) EnvironmentPresetUnknownEnvironmentError environments (hpcflow.app.Action attribute) (hpcflow.app.ElementResources attribute) (hpcflow.app.ElementSet attribute) (hpcflow.app.ResourceSpec property) (hpcflow.app.Submission property) (hpcflow.app.WorkflowTemplate attribute) (hpcflow.sdk.core.actions.Action attribute) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.task.ElementSet attribute) (hpcflow.sdk.core.types.ResourceSpecArgs attribute) (hpcflow.sdk.core.workflow.WorkflowTemplate attribute) (hpcflow.sdk.submission.submission.Submission property) (hpcflow.sdk.typing.TemplateComponents attribute) EnvironmentsList (class in hpcflow.app) (class in hpcflow.sdk.core.object_list) EnvironmentSpecValidationError envs (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) error (hpcflow.sdk.core.enums.EARStatus attribute) errored (hpcflow.sdk.submission.enums.JobscriptElementState attribute) es_idx (hpcflow.sdk.persistence.base.StoreElement attribute) (hpcflow.sdk.persistence.json.JsonStoreElement attribute) (hpcflow.sdk.persistence.types.ElemMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElement attribute) Executable (class in hpcflow.app) (class in hpcflow.sdk.core.environment) executable (hpcflow.app.Command attribute) (hpcflow.sdk.core.commands.Command attribute) (hpcflow.sdk.submission.shells.base.Shell property) (hpcflow.sdk.submission.shells.bash.Bash property) (hpcflow.sdk.submission.shells.bash.WSLBash property) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell property) executable_name (hpcflow.sdk.runtime.RunTimeInfo property) executable_path (hpcflow.sdk.runtime.RunTimeInfo property) ExecutableInstance (class in hpcflow.app) (class in hpcflow.sdk.core.environment) executables (hpcflow.app.Environment attribute) (hpcflow.sdk.core.environment.Environment attribute) ExecutablesList (class in hpcflow.app) (class in hpcflow.sdk.core.object_list) execution_path (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) exists() (hpcflow.sdk.core.types.AbstractFileSystem method) exists_in_schedulers() (in module hpcflow.sdk.config.callbacks) EXIT_CODE hpcflow-internal-workflow-PATH-set-ear-end command line option exit_code (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.json.JsonStoreEAR attribute) (hpcflow.sdk.persistence.types.RunMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) expand() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) EXPLICIT (hpcflow.app.ParameterPropagationMode attribute) ext (hpcflow.app.FileNameSpec property) (hpcflow.app.FileSpec property) (hpcflow.sdk.core.command_files.FileNameSpec property) (hpcflow.sdk.core.command_files.FileSpec property) extension (hpcflow.app.InputFile property) (hpcflow.app.InputFileGeneratorSource property) (hpcflow.app.OutputFileParserSource property) (hpcflow.sdk.core.command_files.InputFile property) (hpcflow.sdk.core.command_files.InputFileGeneratorSource property) (hpcflow.sdk.core.command_files.OutputFileParserSource property) extra_schemas (hpcflow.sdk.config.config.ConfigOptions attribute) ExtraInputs

F

f (hpcflow.sdk.core.test_utils.P1_sub_parameter_cls_2 attribute) File (class in hpcflow.sdk.persistence.types) file (hpcflow.app.InputFile attribute) (hpcflow.app.InputFileGeneratorSource attribute) (hpcflow.app.OutputFileParserSource attribute) (hpcflow.sdk.core.command_files.InputFile attribute) (hpcflow.sdk.core.command_files.InputFileGeneratorSource attribute) (hpcflow.sdk.core.command_files.OutputFileParserSource attribute) (hpcflow.sdk.persistence.base.StoreParameter attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreParameter attribute) FILE_NAME hpcflow-demo-data-cache command line option hpcflow-demo-data-copy command line option file_name (hpcflow.app.FileNameExt attribute) (hpcflow.app.FileNameStem attribute) (hpcflow.sdk.core.command_files.FileNameExt attribute) (hpcflow.sdk.core.command_files.FileNameStem attribute) FILE_PATH hpcflow-config-import command line option file_path (hpcflow.sdk.log.TimeIt attribute) FileDescriptor (class in hpcflow.sdk.persistence.types) FileNameExt (class in hpcflow.app) (class in hpcflow.sdk.core.command_files) FileNamePart (class in hpcflow.sdk.core.command_files) FileNameSpec (class in hpcflow.app) (class in hpcflow.sdk.core.command_files) FileNameStem (class in hpcflow.app) (class in hpcflow.sdk.core.command_files) FileSpec (class in hpcflow.app) (class in hpcflow.sdk.core.command_files) FileSpecValidationError filter() (hpcflow.app.ElementFilter method) (hpcflow.sdk.core.element.ElementFilter method) filter_instances() (hpcflow.app.Executable method) (hpcflow.sdk.core.environment.Executable method) finished (hpcflow.sdk.submission.enums.JobscriptElementState attribute) flatten() (in module hpcflow.sdk.core.utils) format (hpcflow.sdk.core.types.ScriptData attribute) format_loop_check() (hpcflow.sdk.submission.shells.base.Shell method) (hpcflow.sdk.submission.shells.bash.Bash method) (hpcflow.sdk.submission.shells.bash.WSLBash method) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell method) format_option() (in module hpcflow.sdk.cli_common) format_options() (hpcflow.app.QueuedScheduler method) (hpcflow.app.SGEPosix method) (hpcflow.app.SlurmPosix method) (hpcflow.sdk.submission.schedulers.QueuedScheduler method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix method) format_save_parameter() (hpcflow.sdk.submission.shells.base.Shell method) (hpcflow.sdk.submission.shells.bash.Bash method) (hpcflow.sdk.submission.shells.bash.WSLBash method) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell method) format_stream_assignment() (hpcflow.sdk.submission.shells.base.Shell method) (hpcflow.sdk.submission.shells.bash.Bash static method) (hpcflow.sdk.submission.shells.bash.WSLBash static method) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell method) format_switch() (hpcflow.app.QueuedScheduler method) (hpcflow.app.SGEPosix method) (hpcflow.app.SlurmPosix method) (hpcflow.sdk.submission.schedulers.QueuedScheduler method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix method) from_CLI (hpcflow.sdk.runtime.RunTimeInfo attribute) from_data() (hpcflow.sdk.core.test_utils.P1_parameter_cls class method) from_file() (hpcflow.app.ValueSequence class method) (hpcflow.app.Workflow class method) (hpcflow.app.WorkflowTemplate class method) (hpcflow.sdk.core.parameters.ValueSequence class method) (hpcflow.sdk.core.test_utils.P1_parameter_cls class method) (hpcflow.sdk.core.workflow.Workflow class method) (hpcflow.sdk.core.workflow.WorkflowTemplate class method) from_geometric_space() (hpcflow.app.ValueSequence class method) (hpcflow.sdk.core.parameters.ValueSequence class method) from_JSON_file() (hpcflow.app.Workflow class method) (hpcflow.app.WorkflowTemplate class method) (hpcflow.sdk.core.workflow.Workflow class method) (hpcflow.sdk.core.workflow.WorkflowTemplate class method) from_json_like() (hpcflow.app.Action class method) (hpcflow.app.ActionEnvironment class method) (hpcflow.app.ActionRule class method) (hpcflow.app.ActionScope class method) (hpcflow.app.Command class method) (hpcflow.app.CommandFilesList class method) (hpcflow.app.ElementFilter class method) (hpcflow.app.ElementGroup class method) (hpcflow.app.ElementResources class method) (hpcflow.app.ElementSet class method) (hpcflow.app.Environment class method) (hpcflow.app.EnvironmentsList class method) (hpcflow.app.Executable class method) (hpcflow.app.ExecutableInstance class method) (hpcflow.app.ExecutablesList class method) (hpcflow.app.FileNameExt class method) (hpcflow.app.FileNameSpec class method) (hpcflow.app.FileNameStem class method) (hpcflow.app.FileSpec class method) (hpcflow.app.GroupList class method) (hpcflow.app.InputFile class method) (hpcflow.app.InputFileGenerator class method) (hpcflow.app.InputFileGeneratorSource class method) (hpcflow.app.InputSource class method) (hpcflow.app.InputValue class method) (hpcflow.app.Jobscript class method) (hpcflow.app.Loop class method) (hpcflow.app.NumCores class method) (hpcflow.app.OutputFileParser class method) (hpcflow.app.OutputFileParserSource class method) (hpcflow.app.OutputLabel class method) (hpcflow.app.Parameter class method) (hpcflow.app.ParameterPath class method) (hpcflow.app.ParametersList class method) (hpcflow.app.ResourceList class method) (hpcflow.app.ResourceSpec class method) (hpcflow.app.Rule class method) (hpcflow.app.SchemaInput class method) (hpcflow.app.SchemaOutput class method) (hpcflow.app.SchemaParameter class method) (hpcflow.app.Submission class method) (hpcflow.app.Task class method) (hpcflow.app.TaskList class method) (hpcflow.app.TaskObjective class method) (hpcflow.app.TaskSchema class method) (hpcflow.app.TaskSchemasList class method) (hpcflow.app.TaskTemplateList class method) (hpcflow.app.ValuePerturbation class method) (hpcflow.app.ValueSequence class method) (hpcflow.app.WorkflowLoopList class method) (hpcflow.app.WorkflowTaskList class method) (hpcflow.app.WorkflowTemplate class method) (hpcflow.sdk.core.actions.Action class method) (hpcflow.sdk.core.actions.ActionEnvironment class method) (hpcflow.sdk.core.actions.ActionRule class method) (hpcflow.sdk.core.actions.ActionScope class method) (hpcflow.sdk.core.command_files.FileNameExt class method) (hpcflow.sdk.core.command_files.FileNameSpec class method) (hpcflow.sdk.core.command_files.FileNameStem class method) (hpcflow.sdk.core.command_files.FileSpec class method) (hpcflow.sdk.core.command_files.InputFile class method) (hpcflow.sdk.core.command_files.InputFileGenerator class method) (hpcflow.sdk.core.command_files.InputFileGeneratorSource class method) (hpcflow.sdk.core.command_files.OutputFileParser class method) (hpcflow.sdk.core.command_files.OutputFileParserSource class method) (hpcflow.sdk.core.commands.Command class method) (hpcflow.sdk.core.element.ElementFilter class method) (hpcflow.sdk.core.element.ElementGroup class method) (hpcflow.sdk.core.element.ElementResources class method) (hpcflow.sdk.core.environment.Environment class method) (hpcflow.sdk.core.environment.Executable class method) (hpcflow.sdk.core.environment.ExecutableInstance class method) (hpcflow.sdk.core.environment.NumCores class method) (hpcflow.sdk.core.json_like.BaseJSONLike class method) (hpcflow.sdk.core.json_like.JSONLike class method) (hpcflow.sdk.core.loop.Loop class method) (hpcflow.sdk.core.object_list.AppDataList class method) (hpcflow.sdk.core.object_list.CommandFilesList class method) (hpcflow.sdk.core.object_list.DotAccessObjectList class method) (hpcflow.sdk.core.object_list.EnvironmentsList class method) (hpcflow.sdk.core.object_list.ExecutablesList class method) (hpcflow.sdk.core.object_list.GroupList class method) (hpcflow.sdk.core.object_list.ObjectList class method) (hpcflow.sdk.core.object_list.ParametersList class method) (hpcflow.sdk.core.object_list.ResourceList class method) (hpcflow.sdk.core.object_list.TaskList class method) (hpcflow.sdk.core.object_list.TaskSchemasList class method) (hpcflow.sdk.core.object_list.TaskTemplateList class method) (hpcflow.sdk.core.object_list.WorkflowLoopList class method) (hpcflow.sdk.core.object_list.WorkflowTaskList class method) (hpcflow.sdk.core.parameters.AbstractInputValue class method) (hpcflow.sdk.core.parameters.InputSource class method) (hpcflow.sdk.core.parameters.InputValue class method) (hpcflow.sdk.core.parameters.Parameter class method) (hpcflow.sdk.core.parameters.ParameterPath class method) (hpcflow.sdk.core.parameters.ResourceSpec class method) (hpcflow.sdk.core.parameters.SchemaInput class method) (hpcflow.sdk.core.parameters.SchemaOutput class method) (hpcflow.sdk.core.parameters.SchemaParameter class method) (hpcflow.sdk.core.parameters.ValuePerturbation class method) (hpcflow.sdk.core.parameters.ValueSequence class method) (hpcflow.sdk.core.rule.Rule class method) (hpcflow.sdk.core.task.ElementSet class method) (hpcflow.sdk.core.task.OutputLabel class method) (hpcflow.sdk.core.task.Task class method) (hpcflow.sdk.core.task_schema.TaskObjective class method) (hpcflow.sdk.core.task_schema.TaskSchema class method) (hpcflow.sdk.core.workflow.WorkflowTemplate class method) (hpcflow.sdk.submission.jobscript.Jobscript class method) (hpcflow.sdk.submission.submission.Submission class method)

from_JSON_string() (hpcflow.app.Workflow class method) (hpcflow.app.WorkflowTemplate class method) (hpcflow.sdk.core.workflow.Workflow class method) (hpcflow.sdk.core.workflow.WorkflowTemplate class method) from_linear_space() (hpcflow.app.ValueSequence class method) (hpcflow.sdk.core.parameters.ValueSequence class method) from_log_space() (hpcflow.app.ValueSequence class method) (hpcflow.sdk.core.parameters.ValueSequence class method) from_random_uniform() (hpcflow.app.ValueSequence class method) (hpcflow.sdk.core.parameters.ValueSequence class method) from_range() (hpcflow.app.ValueSequence class method) (hpcflow.sdk.core.parameters.ValueSequence class method) from_rectangle() (hpcflow.app.ValueSequence class method) (hpcflow.sdk.core.parameters.ValueSequence class method) from_spec() (hpcflow.app.ExecutableInstance class method) (hpcflow.app.ValuePerturbation class method) (hpcflow.sdk.core.environment.ExecutableInstance class method) (hpcflow.sdk.core.parameters.ValuePerturbation class method) from_string() (hpcflow.app.InputSource class method) (hpcflow.sdk.core.parameters.InputSource class method) from_template() (hpcflow.app.Workflow class method) (hpcflow.sdk.core.workflow.Workflow class method) from_template_data() (hpcflow.app.Workflow class method) (hpcflow.sdk.core.workflow.Workflow class method) from_YAML_file() (hpcflow.app.Workflow class method) (hpcflow.app.WorkflowTemplate class method) (hpcflow.sdk.core.workflow.Workflow class method) (hpcflow.sdk.core.workflow.WorkflowTemplate class method) from_YAML_string() (hpcflow.app.Workflow class method) (hpcflow.app.WorkflowTemplate class method) (hpcflow.sdk.core.workflow.Workflow class method) (hpcflow.sdk.core.workflow.WorkflowTemplate class method) from_zarr() (hpcflow.sdk.core.zarr_io.ZarrEncodable class method) fromkeys() (hpcflow.sdk.config.types.ConfigDescriptor method) (hpcflow.sdk.config.types.ConfigMetadata method) (hpcflow.sdk.config.types.DefaultConfiguration method) (hpcflow.sdk.config.types.InvocationDescriptor method) (hpcflow.sdk.config.types.SchedulerConfigDescriptor method) (hpcflow.sdk.config.types.SGEParallelEnvsDescriptor method) (hpcflow.sdk.config.types.ShellConfigDescriptor method) (hpcflow.sdk.config.types.SLURMPartitionsDescriptor method) (hpcflow.sdk.core.loop_cache.LoopIndex method) (hpcflow.sdk.core.types.ActParameterDependence method) (hpcflow.sdk.core.types.CreationInfo method) (hpcflow.sdk.core.types.DependentDescriptor method) (hpcflow.sdk.core.types.ElementDescriptor method) (hpcflow.sdk.core.types.IterableParam method) (hpcflow.sdk.core.types.JobscriptSubmissionFailureArgs method) (hpcflow.sdk.core.types.LabelInfo method) (hpcflow.sdk.core.types.LabellingDescriptor method) (hpcflow.sdk.core.types.MultiplicityDescriptor method) (hpcflow.sdk.core.types.ParameterDependence method) (hpcflow.sdk.core.types.ParentPath method) (hpcflow.sdk.core.types.Pending method) (hpcflow.sdk.core.types.RelevantData method) (hpcflow.sdk.core.types.RepeatsDescriptor method) (hpcflow.sdk.core.types.ResourceSpecArgs method) (hpcflow.sdk.core.types.RuleArgs method) (hpcflow.sdk.core.types.SchemaInputKwargs method) (hpcflow.sdk.core.types.ScriptData method) (hpcflow.sdk.core.types.SiblingPath method) (hpcflow.sdk.core.types.UpdatePath method) (hpcflow.sdk.core.types.WorkflowTemplateTaskData method) (hpcflow.sdk.persistence.types.ElemMeta method) (hpcflow.sdk.persistence.types.EncodedStoreParameter method) (hpcflow.sdk.persistence.types.File method) (hpcflow.sdk.persistence.types.FileDescriptor method) (hpcflow.sdk.persistence.types.IterMeta method) (hpcflow.sdk.persistence.types.LoopDescriptor method) (hpcflow.sdk.persistence.types.Metadata method) (hpcflow.sdk.persistence.types.PersistenceCache method) (hpcflow.sdk.persistence.types.RunMeta method) (hpcflow.sdk.persistence.types.StoreCreationInfo method) (hpcflow.sdk.persistence.types.TaskMeta method) (hpcflow.sdk.persistence.types.TemplateMeta method) (hpcflow.sdk.persistence.types.TypeLookup method) (hpcflow.sdk.persistence.types.ZarrAttrsDict method) (hpcflow.sdk.submission.types.JobScriptCreationArguments method) (hpcflow.sdk.submission.types.JobScriptDescriptor method) (hpcflow.sdk.submission.types.JobscriptHeaderArgs method) (hpcflow.sdk.submission.types.ResolvedDependencies method) (hpcflow.sdk.submission.types.SchedulerRef method) (hpcflow.sdk.submission.types.SubmissionPart method) (hpcflow.sdk.typing.KnownSubmission method) (hpcflow.sdk.typing.KnownSubmissionItem method) (hpcflow.sdk.typing.ParamSource method) (hpcflow.sdk.typing.TemplateComponents method) FromSpecMissingObjectError

G

generate_data_index() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) generate_EAR_resource_map() (in module hpcflow.sdk.submission.jobscript) generate_new_elements() (hpcflow.app.WorkflowTask method) (hpcflow.sdk.core.task.WorkflowTask method) generator (hpcflow.app.InputFileGeneratorSource attribute) (hpcflow.sdk.core.command_files.InputFileGeneratorSource attribute) get() (hpcflow.app.CommandFilesList method) (hpcflow.app.Element method) (hpcflow.app.ElementAction method) (hpcflow.app.ElementActionRun method) (hpcflow.app.ElementIteration method) (hpcflow.app.EnvironmentsList method) (hpcflow.app.ExecutablesList method) (hpcflow.app.GroupList method) (hpcflow.app.ParametersList method) (hpcflow.app.ResourceList method) (hpcflow.app.TaskList method) (hpcflow.app.TaskSchemasList method) (hpcflow.app.TaskTemplateList method) (hpcflow.app.WorkflowLoopList method) (hpcflow.app.WorkflowTask method) (hpcflow.app.WorkflowTaskList method) (hpcflow.sdk.config.config.Config method) (hpcflow.sdk.config.types.ConfigDescriptor method) (hpcflow.sdk.config.types.ConfigMetadata method) (hpcflow.sdk.config.types.DefaultConfiguration method) (hpcflow.sdk.config.types.InvocationDescriptor method) (hpcflow.sdk.config.types.SchedulerConfigDescriptor method) (hpcflow.sdk.config.types.SGEParallelEnvsDescriptor method) (hpcflow.sdk.config.types.ShellConfigDescriptor method) (hpcflow.sdk.config.types.SLURMPartitionsDescriptor method) (hpcflow.sdk.core.actions.ElementAction method) (hpcflow.sdk.core.actions.ElementActionRun method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) (hpcflow.sdk.core.loop_cache.LoopIndex method) (hpcflow.sdk.core.object_list.AppDataList method) (hpcflow.sdk.core.object_list.CommandFilesList method) (hpcflow.sdk.core.object_list.DotAccessObjectList method) (hpcflow.sdk.core.object_list.EnvironmentsList method) (hpcflow.sdk.core.object_list.ExecutablesList method) (hpcflow.sdk.core.object_list.GroupList method) (hpcflow.sdk.core.object_list.ObjectList method) (hpcflow.sdk.core.object_list.ParametersList method) (hpcflow.sdk.core.object_list.ResourceList method) (hpcflow.sdk.core.object_list.TaskList method) (hpcflow.sdk.core.object_list.TaskSchemasList method) (hpcflow.sdk.core.object_list.TaskTemplateList method) (hpcflow.sdk.core.object_list.WorkflowLoopList method) (hpcflow.sdk.core.object_list.WorkflowTaskList method) (hpcflow.sdk.core.task.WorkflowTask method) (hpcflow.sdk.core.types.ActParameterDependence method) (hpcflow.sdk.core.types.CreationInfo method) (hpcflow.sdk.core.types.DependentDescriptor method) (hpcflow.sdk.core.types.ElementDescriptor method) (hpcflow.sdk.core.types.IterableParam method) (hpcflow.sdk.core.types.JobscriptSubmissionFailureArgs method) (hpcflow.sdk.core.types.LabelInfo method) (hpcflow.sdk.core.types.LabellingDescriptor method) (hpcflow.sdk.core.types.MultiplicityDescriptor method) (hpcflow.sdk.core.types.ParameterDependence method) (hpcflow.sdk.core.types.ParentPath method) (hpcflow.sdk.core.types.Pending method) (hpcflow.sdk.core.types.RelevantData method) (hpcflow.sdk.core.types.RepeatsDescriptor method) (hpcflow.sdk.core.types.ResourceSpecArgs method) (hpcflow.sdk.core.types.RuleArgs method) (hpcflow.sdk.core.types.SchemaInputKwargs method) (hpcflow.sdk.core.types.ScriptData method) (hpcflow.sdk.core.types.SiblingPath method) (hpcflow.sdk.core.types.UpdatePath method) (hpcflow.sdk.core.types.WorkflowTemplateTaskData method) (hpcflow.sdk.persistence.types.ElemMeta method) (hpcflow.sdk.persistence.types.EncodedStoreParameter method) (hpcflow.sdk.persistence.types.File method) (hpcflow.sdk.persistence.types.FileDescriptor method) (hpcflow.sdk.persistence.types.IterMeta method) (hpcflow.sdk.persistence.types.LoopDescriptor method) (hpcflow.sdk.persistence.types.Metadata method) (hpcflow.sdk.persistence.types.PersistenceCache method) (hpcflow.sdk.persistence.types.RunMeta method) (hpcflow.sdk.persistence.types.StoreCreationInfo method) (hpcflow.sdk.persistence.types.TaskMeta method) (hpcflow.sdk.persistence.types.TemplateMeta method) (hpcflow.sdk.persistence.types.TypeLookup method) (hpcflow.sdk.persistence.types.ZarrAttrsDict method) (hpcflow.sdk.submission.types.JobScriptCreationArguments method) (hpcflow.sdk.submission.types.JobScriptDescriptor method) (hpcflow.sdk.submission.types.JobscriptHeaderArgs method) (hpcflow.sdk.submission.types.ResolvedDependencies method) (hpcflow.sdk.submission.types.SchedulerRef method) (hpcflow.sdk.submission.types.SubmissionPart method) (hpcflow.sdk.typing.KnownSubmission method) (hpcflow.sdk.typing.KnownSubmissionItem method) (hpcflow.sdk.typing.ParamSource method) (hpcflow.sdk.typing.TemplateComponents method) get_action_rules() (hpcflow.app.InputFileGenerator method) (hpcflow.app.OutputFileParser method) (hpcflow.sdk.core.command_files.InputFileGenerator method) (hpcflow.sdk.core.command_files.OutputFileParser method) get_activate_env_command() (hpcflow.sdk.runtime.RunTimeInfo method) get_active_jobscripts() (hpcflow.app.Submission method) (hpcflow.sdk.submission.submission.Submission method) get_active_states() (hpcflow.app.Jobscript method) (hpcflow.sdk.submission.jobscript.Jobscript method) get_all() (hpcflow.app.CommandFilesList method) (hpcflow.app.EnvironmentsList method) (hpcflow.app.ExecutablesList method) (hpcflow.app.GroupList method) (hpcflow.app.ParametersList method) (hpcflow.app.ResourceList method) (hpcflow.app.TaskList method) (hpcflow.app.TaskSchemasList method) (hpcflow.app.TaskTemplateList method) (hpcflow.app.WorkflowLoopList method) (hpcflow.app.WorkflowTaskList method) (hpcflow.sdk.config.config.Config method) (hpcflow.sdk.core.object_list.AppDataList method) (hpcflow.sdk.core.object_list.CommandFilesList method) (hpcflow.sdk.core.object_list.DotAccessObjectList method) (hpcflow.sdk.core.object_list.EnvironmentsList method) (hpcflow.sdk.core.object_list.ExecutablesList method) (hpcflow.sdk.core.object_list.GroupList method) (hpcflow.sdk.core.object_list.ObjectList method) (hpcflow.sdk.core.object_list.ParametersList method) (hpcflow.sdk.core.object_list.ResourceList method) (hpcflow.sdk.core.object_list.TaskList method) (hpcflow.sdk.core.object_list.TaskSchemasList method) (hpcflow.sdk.core.object_list.TaskTemplateList method) (hpcflow.sdk.core.object_list.WorkflowLoopList method) (hpcflow.sdk.core.object_list.WorkflowTaskList method) get_all_EARs() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_all_element_iterations() (hpcflow.app.Workflow method) (hpcflow.app.WorkflowTask method) (hpcflow.sdk.core.task.WorkflowTask method) (hpcflow.sdk.core.workflow.Workflow method) get_all_elements() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_all_parameter_data() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_all_parameter_sources() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_all_parameters() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_all_previous_iteration_runs() (hpcflow.app.ElementActionRun method) (hpcflow.sdk.core.actions.ElementActionRun method) get_all_submission_run_IDs() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_app_attribute() (in module hpcflow.sdk.app) get_app_module_all() (in module hpcflow.sdk.app) get_app_module_dir() (in module hpcflow.sdk.app) get_available_task_input_sources() (hpcflow.app.Task method) (hpcflow.sdk.core.task.Task method) get_by_key() (hpcflow.app.TaskSchema class method) (hpcflow.sdk.core.task_schema.TaskSchema class method) get_child_loops() (hpcflow.app.WorkflowLoop method) (hpcflow.sdk.core.loop.WorkflowLoop method) get_command_input_file_labels() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_command_input_types() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_command_line() (hpcflow.app.Command method) (hpcflow.sdk.core.commands.Command method) get_command_output_types() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_commands_action_env() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_commands_file_name() (hpcflow.app.Jobscript method) (hpcflow.app.RunDirAppFiles class method) (hpcflow.sdk.core.run_dir_files.RunDirAppFiles class method) (hpcflow.sdk.submission.jobscript.Jobscript method) get_config_CLI() (in module hpcflow.sdk.config.cli) get_config_file_path() (hpcflow.sdk.config.config_file.ConfigFile static method) get_config_item() (hpcflow.sdk.config.config_file.ConfigFile method) get_config_path() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) get_configurable() (hpcflow.sdk.config.config.Config method) get_creation_info() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_data_idx() (hpcflow.app.Element method) (hpcflow.app.ElementAction method) (hpcflow.app.ElementActionRun method) (hpcflow.app.ElementIteration method) (hpcflow.sdk.core.actions.ElementAction method) (hpcflow.sdk.core.actions.ElementActionRun method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) get_deactivate_env_command() (hpcflow.sdk.runtime.RunTimeInfo method) get_default_os_name() (hpcflow.app.ElementResources static method) (hpcflow.sdk.core.element.ElementResources static method) get_default_scheduler() (hpcflow.app.ElementResources class method) (hpcflow.sdk.core.element.ElementResources class method) get_default_shell() (hpcflow.app.ElementResources class method) (hpcflow.sdk.core.element.ElementResources class method) get_defined_parameter_types() (hpcflow.app.ElementSet method) (hpcflow.sdk.core.task.ElementSet method) get_defined_sub_parameter_types() (hpcflow.app.ElementSet method) (hpcflow.sdk.core.task.ElementSet method) get_demo_data_file_path() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) get_demo_data_files_manifest() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) get_demo_software_CLI() (in module hpcflow.sdk.demo.cli) get_demo_workflow_CLI() (in module hpcflow.sdk.demo.cli) get_demo_workflow_template_file() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) get_dependent_EARs() (hpcflow.app.Element method) (hpcflow.app.ElementActionRun method) (hpcflow.app.ElementIteration method) (hpcflow.sdk.core.actions.ElementActionRun method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) get_dependent_element_iterations() (hpcflow.app.Element method) (hpcflow.app.ElementIteration method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) get_dependent_elements() (hpcflow.app.Element method) (hpcflow.app.ElementIteration method) (hpcflow.app.WorkflowTask method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) (hpcflow.sdk.core.task.WorkflowTask method) get_dependent_elements_recursively() (hpcflow.app.Element method) (hpcflow.sdk.core.element.Element method) get_dependent_tasks() (hpcflow.app.Element method) (hpcflow.app.ElementIteration method) (hpcflow.app.WorkflowTask method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) (hpcflow.sdk.core.task.WorkflowTask method) get_dir_name() (hpcflow.app.WorkflowTask method) (hpcflow.sdk.core.task.WorkflowTask method) get_direct_submit_command() (hpcflow.sdk.submission.shells.base.Shell method) (hpcflow.sdk.submission.shells.bash.Bash method) (hpcflow.sdk.submission.shells.bash.WSLBash method) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell method) get_duplicate_items() (in module hpcflow.sdk.core.utils) get_EAR_dependencies() (hpcflow.app.Element method) (hpcflow.app.ElementActionRun method) (hpcflow.app.ElementIteration method) (hpcflow.sdk.core.actions.ElementActionRun method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) get_EAR_IDs_of_tasks() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_EAR_skipped() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_EARs() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_EARs_from_IDs() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_EARs_of_tasks() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_element_dependencies() (hpcflow.app.Element method) (hpcflow.app.ElementIteration method) (hpcflow.app.WorkflowTask method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) (hpcflow.sdk.core.task.WorkflowTask method) get_element_IDs_from_EAR_IDs() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_element_iteration_dependencies() (hpcflow.app.Element method) (hpcflow.app.ElementIteration method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) get_element_iteration_IDs_from_EAR_IDs() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_element_iterations() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_element_iterations_from_IDs() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_element_iterations_of_tasks() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_elements() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_elements_from_IDs() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_end_time() (hpcflow.app.Submission method) (hpcflow.sdk.submission.submission.Submission method) get_enum_by_name_or_val() (in module hpcflow.sdk.core.utils) get_env_instance_filterable_attributes() (hpcflow.app.ElementResources static method) (hpcflow.sdk.core.element.ElementResources static method) get_environment() (hpcflow.app.Action method) (hpcflow.app.ElementActionRun method) (hpcflow.sdk.core.actions.Action method) (hpcflow.sdk.core.actions.ElementActionRun method) get_environment_name() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_environment_spec() (hpcflow.app.Action method) (hpcflow.app.ElementActionRun method) (hpcflow.sdk.core.actions.Action method) (hpcflow.sdk.core.actions.ElementActionRun method) get_failures_string() (hpcflow.sdk.core.validation.ValidatedData method) get_file_context() (in module hpcflow.sdk.core.utils) get_helper_CLI() (in module hpcflow.sdk.helper.cli) get_helper_log_path() (in module hpcflow.sdk.helper.helper) get_helper_logger() (in module hpcflow.sdk.helper.helper) get_helper_PID() (in module hpcflow.sdk.helper.helper) get_helper_uptime() (in module hpcflow.sdk.helper.helper) get_helper_watch_list() (in module hpcflow.sdk.helper.helper) get_IFG_input_values() (hpcflow.app.ElementActionRun method) (hpcflow.sdk.core.actions.ElementActionRun method) get_in_container() (in module hpcflow.sdk.core.utils) get_info() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) get_info_html() (hpcflow.app.TaskSchema method) (hpcflow.sdk.core.task_schema.TaskSchema method) get_input_dependencies() (hpcflow.app.Element method) (hpcflow.app.ElementActionRun method) (hpcflow.app.ElementIteration method) (hpcflow.sdk.core.actions.ElementActionRun method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) get_input_file_generator_action_env() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method)

get_input_file_labels() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_input_statuses() (hpcflow.app.Task method) (hpcflow.sdk.core.task.Task method) get_input_types() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_input_values() (hpcflow.app.ElementActionRun method) (hpcflow.sdk.core.actions.ElementActionRun method) get_input_values_direct() (hpcflow.app.ElementActionRun method) (hpcflow.sdk.core.actions.ElementActionRun method) get_instance() (hpcflow.sdk.app.Singleton method) get_invoc_data() (hpcflow.sdk.config.config_file.ConfigFile method) get_invocation() (hpcflow.sdk.config.config_file.ConfigFile method) get_item_repeat_index() (in module hpcflow.sdk.core.utils) get_iter_IDs() (hpcflow.sdk.core.loop_cache.LoopCache method) get_iter_loop_indices() (hpcflow.sdk.core.loop_cache.LoopCache method) get_iteration_final_run_IDs() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_iteration_task_pathway() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_job_state_info() (hpcflow.app.DirectPosix method) (hpcflow.app.DirectWindows method) (hpcflow.app.QueuedScheduler method) (hpcflow.app.SGEPosix method) (hpcflow.app.SlurmPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectScheduler method) (hpcflow.sdk.submission.schedulers.direct.DirectWindows method) (hpcflow.sdk.submission.schedulers.QueuedScheduler method) (hpcflow.sdk.submission.schedulers.Scheduler method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix method) get_job_statuses() (hpcflow.app.SGEPosix method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) get_jobscript_hash() (hpcflow.app.ElementResources method) (hpcflow.sdk.core.element.ElementResources method) get_key() (hpcflow.app.TaskSchema method) (hpcflow.sdk.core.task_schema.TaskSchema method) get_known_submissions (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) get_known_submissions() (in module hpcflow.app) get_locally_defined_inputs() (hpcflow.app.ElementSet method) (hpcflow.sdk.core.task.ElementSet method) get_log_file_name() (hpcflow.app.RunDirAppFiles class method) (hpcflow.sdk.core.run_dir_files.RunDirAppFiles class method) get_login_nodes() (hpcflow.app.SGEPosix method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) get_loop_map() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_loops() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_loops_by_IDs() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_md5_hash() (in module hpcflow.sdk.core.utils) get_name() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_nested_indices() (in module hpcflow.sdk.core.utils) get_non_running_submitted_states() (hpcflow.sdk.core.enums.EARStatus class method) get_OFP_inputs() (hpcflow.app.ElementActionRun method) (hpcflow.sdk.core.actions.ElementActionRun method) get_OFP_output_files() (hpcflow.app.ElementActionRun method) (hpcflow.sdk.core.actions.ElementActionRun method) get_OFP_outputs() (hpcflow.app.ElementActionRun method) (hpcflow.sdk.core.actions.ElementActionRun method) get_OS_info (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) get_OS_info() (in module hpcflow.app) (in module hpcflow.sdk.submission.shells.os_version) get_OS_info_POSIX() (in module hpcflow.sdk.submission.shells.os_version) get_OS_info_windows() (in module hpcflow.sdk.submission.shells.os_version) get_OS_supported_schedulers() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) get_output_file_labels() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_output_file_parser_action_env() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_output_types() (hpcflow.app.Action method) (hpcflow.app.Command method) (hpcflow.sdk.core.actions.Action method) (hpcflow.sdk.core.commands.Command method) get_param_dump_file_path_HDF5() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_param_dump_file_path_JSON() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_param_load_file_path_HDF5() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_param_load_file_path_JSON() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_param_provided_element_sets() (hpcflow.app.Task method) (hpcflow.sdk.core.task.Task method) get_parameter() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_parameter_data() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_parameter_dependence() (hpcflow.app.Action method) (hpcflow.app.TaskSchema method) (hpcflow.sdk.core.actions.Action method) (hpcflow.sdk.core.task_schema.TaskSchema method) get_parameter_names() (hpcflow.app.Action method) (hpcflow.app.ElementAction method) (hpcflow.app.ElementActionRun method) (hpcflow.app.ElementIteration method) (hpcflow.sdk.core.actions.Action method) (hpcflow.sdk.core.actions.ElementAction method) (hpcflow.sdk.core.actions.ElementActionRun method) (hpcflow.sdk.core.element.ElementIteration method) get_parameter_set_statuses() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_parameter_source() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_parameter_sources() (hpcflow.app.Element method) (hpcflow.app.ElementAction method) (hpcflow.app.ElementActionRun method) (hpcflow.app.ElementIteration method) (hpcflow.app.Workflow method) (hpcflow.sdk.core.actions.ElementAction method) (hpcflow.sdk.core.actions.ElementActionRun method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_parameter_task_schema_map() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) get_parameters() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_parent_loops() (hpcflow.app.WorkflowLoop method) (hpcflow.sdk.core.loop.WorkflowLoop method) get_PID_file_path() (in module hpcflow.sdk.helper.helper) get_possible_scopes() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_precise_scope() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_process_stamp() (in module hpcflow.sdk.core.utils) get_relative_path() (in module hpcflow.sdk.core.utils) get_required_executables() (hpcflow.app.Action method) (hpcflow.app.Command method) (hpcflow.sdk.core.actions.Action method) (hpcflow.sdk.core.commands.Command method) get_resources() (hpcflow.app.ElementActionRun method) (hpcflow.app.ElementIteration method) (hpcflow.sdk.core.actions.ElementActionRun method) (hpcflow.sdk.core.element.ElementIteration method) get_resources_obj() (hpcflow.app.ElementIteration method) (hpcflow.sdk.core.element.ElementIteration method) get_run_file_prefix() (hpcflow.app.RunDirAppFiles static method) (hpcflow.sdk.core.run_dir_files.RunDirAppFiles static method) get_run_param_dump_file_prefix() (hpcflow.app.RunDirAppFiles class method) (hpcflow.sdk.core.run_dir_files.RunDirAppFiles class method) get_run_param_load_file_prefix() (hpcflow.app.RunDirAppFiles class method) (hpcflow.sdk.core.run_dir_files.RunDirAppFiles class method) get_running_elements() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_running_runs() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_scheduler() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) get_schema() (in module hpcflow.sdk.core.validation) get_schema_action() (hpcflow.app.Task method) (hpcflow.sdk.core.task.Task method) get_scopes() (hpcflow.app.ResourceList method) (hpcflow.sdk.core.object_list.ResourceList method) get_script_name() (hpcflow.app.Action class method) (hpcflow.sdk.core.actions.Action class method) get_SDK_logger() (in module hpcflow.sdk) get_sequence_from_path() (hpcflow.app.ElementSet method) (hpcflow.sdk.core.task.ElementSet method) get_sequence_value() (hpcflow.app.Element method) (hpcflow.sdk.core.element.Element method) get_shell() (in module hpcflow.sdk.submission.shells) get_shell_info (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) get_shell_info() (in module hpcflow.app) get_size() (hpcflow.app.ElementParameter method) (hpcflow.sdk.core.element.ElementParameter method) get_snippet_script_path() (hpcflow.app.Action class method) (hpcflow.sdk.core.actions.Action class method) get_snippet_script_str() (hpcflow.app.Action class method) (hpcflow.sdk.core.actions.Action class method) get_start_time() (hpcflow.app.Submission method) (hpcflow.sdk.submission.submission.Submission method) get_std_file_name() (hpcflow.app.RunDirAppFiles class method) (hpcflow.sdk.core.run_dir_files.RunDirAppFiles class method) get_store_EARs() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_store_element_iterations() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_store_elements() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_store_tasks() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_submissions() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_submissions_by_ID() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_submit_command() (hpcflow.app.DirectPosix method) (hpcflow.app.DirectWindows method) (hpcflow.app.QueuedScheduler method) (hpcflow.app.SGEPosix method) (hpcflow.app.SlurmPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectScheduler method) (hpcflow.sdk.submission.schedulers.direct.DirectWindows method) (hpcflow.sdk.submission.schedulers.QueuedScheduler method) (hpcflow.sdk.submission.schedulers.Scheduler method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix method) get_supported_shells() (in module hpcflow.sdk.submission.shells) get_task() (hpcflow.app.InputSource method) (hpcflow.sdk.core.parameters.InputSource method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_task_dependencies() (hpcflow.app.Element method) (hpcflow.app.ElementIteration method) (hpcflow.app.ElementSet method) (hpcflow.app.WorkflowTask method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) (hpcflow.sdk.core.task.ElementSet method) (hpcflow.sdk.core.task.WorkflowTask method) get_task_elements() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_task_IDs_from_element_IDs() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_task_loop_idx_array() (hpcflow.app.Jobscript method) (hpcflow.sdk.submission.jobscript.Jobscript method) get_task_unique_names() (hpcflow.app.Task static method) (hpcflow.app.Workflow method) (hpcflow.sdk.core.task.Task static method) (hpcflow.sdk.core.workflow.Workflow method) get_tasks() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_tasks_by_IDs() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_template() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_template_components() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_template_resources() (hpcflow.app.ElementIteration method) (hpcflow.sdk.core.element.ElementIteration method) get_time_stamp() (in module hpcflow.sdk.core.utils) get_ts_fmt() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_ts_name_fmt() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_unique_schedulers() (hpcflow.app.Submission method) (hpcflow.sdk.submission.submission.Submission method) get_unique_schedulers_of_jobscripts() (hpcflow.app.Submission static method) (hpcflow.sdk.submission.submission.Submission static method) get_unique_shells() (hpcflow.app.Submission method) (hpcflow.sdk.submission.submission.Submission method) get_version_info() (hpcflow.app.DirectPosix method) (hpcflow.app.DirectWindows method) (hpcflow.app.QueuedScheduler method) (hpcflow.app.SGEPosix method) (hpcflow.app.SlurmPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectScheduler method) (hpcflow.sdk.submission.schedulers.direct.DirectWindows method) (hpcflow.sdk.submission.schedulers.QueuedScheduler method) (hpcflow.sdk.submission.schedulers.Scheduler method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix method) (hpcflow.sdk.submission.shells.base.Shell method) (hpcflow.sdk.submission.shells.bash.Bash method) (hpcflow.sdk.submission.shells.bash.WSLBash method) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell method) get_wait_command() (hpcflow.sdk.submission.shells.base.Shell method) (hpcflow.sdk.submission.shells.bash.Bash method) (hpcflow.sdk.submission.shells.bash.WSLBash method) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell method) get_watcher_file_path() (in module hpcflow.sdk.helper.helper) GetterCallback (in module hpcflow.sdk.config.types) gh_org (hpcflow.sdk.app.App attribute) (hpcflow.sdk.app.BaseApp attribute) gh_repo (hpcflow.sdk.app.App attribute) (hpcflow.sdk.app.BaseApp attribute) glob() (hpcflow.sdk.core.types.AbstractFileSystem method) group (hpcflow.sdk.core.types.LabelInfo attribute) (hpcflow.sdk.core.types.LabellingDescriptor attribute) group_by_dict_key_values() (in module hpcflow.sdk.core.utils) group_by_distinct (hpcflow.app.ElementGroup attribute) (hpcflow.sdk.core.element.ElementGroup attribute) group_names (hpcflow.sdk.core.types.DependentDescriptor attribute) group_resource_map_into_jobscripts() (in module hpcflow.sdk.submission.jobscript) GroupList (class in hpcflow.app) (class in hpcflow.sdk.core.object_list) groups (hpcflow.app.ElementSet attribute) (hpcflow.sdk.core.task.ElementSet attribute) (hpcflow.sdk.persistence.pending.CommitResourceMap attribute)

H

has_default (hpcflow.sdk.core.task.InputStatus attribute) has_pending (hpcflow.sdk.persistence.base.PersistentStore property) (hpcflow.sdk.persistence.json.JSONPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore property) helper_timeout() (in module hpcflow.sdk.helper.helper) host_user_id (hpcflow.sdk.config.config.Config property) (hpcflow.sdk.config.types.ConfigMetadata attribute) host_user_id_file_path (hpcflow.sdk.config.config.Config property) (hpcflow.sdk.config.types.ConfigMetadata attribute) hostname (hpcflow.sdk.runtime.RunTimeInfo attribute) hpcflow command line option --config-dir --config-key --help --hpcflow-version --run-time-info --timeit --timeit-file --version --with-config hpcflow-cancel command line option --ref-type -r WORKFLOW_REF hpcflow-config command line option --no-callback hpcflow-config-add-scheduler command line option --defaults NAME hpcflow-config-add-shell command line option --defaults NAME hpcflow-config-add-shell-wsl command line option --defaults hpcflow-config-append command line option --json NAME VALUE hpcflow-config-get command line option --all --file --metadata NAME hpcflow-config-import command line option --new --no-rename --rename FILE_PATH hpcflow-config-init command line option --path KNOWN_NAME hpcflow-config-open command line option --path hpcflow-config-pop command line option INDEX NAME hpcflow-config-prepend command line option --json NAME VALUE hpcflow-config-set command line option --json NAME VALUE hpcflow-config-set-github-demo-data-dir command line option SHA hpcflow-config-unset command line option NAME hpcflow-config-update command line option --json NAME VALUE hpcflow-configure-env command line option --env-source-file --setup --use-current-env NAME hpcflow-demo-data command line option --list -l hpcflow-demo-data-cache command line option --all FILE_NAME hpcflow-demo-data-copy command line option DESTINATION FILE_NAME hpcflow-demo-software-doSomething command line option --infile1 --infile2 --out --value -i1 -i2 -o -v hpcflow-demo-workflow command line option --list -l hpcflow-demo-workflow-copy command line option --doc --no-doc DESTINATION WORKFLOW_NAME hpcflow-demo-workflow-go command line option --add-to-known --cancel --format --js-parallelism --name --no-add-to-known --no-status --overwrite --path --print-idx --status --store --tasks --ts-fmt --ts-name-fmt --var --wait -v WORKFLOW_NAME hpcflow-demo-workflow-make command line option --format --name --no-status --overwrite --path --status --store --ts-fmt --ts-name-fmt --var -v WORKFLOW_NAME hpcflow-demo-workflow-show command line option --doc --no-doc --no-syntax --syntax WORKFLOW_NAME hpcflow-go command line option --add-to-known --cancel --format --js-parallelism --name --no-add-to-known --no-status --overwrite --path --print-idx --status --store --string --tasks --ts-fmt --ts-name-fmt --var --wait -v TEMPLATE_FILE_OR_STR hpcflow-helper-pid command line option --file -f hpcflow-helper-restart command line option --timeout --timeout-check-interval --watch-interval hpcflow-helper-run command line option --timeout --timeout-check-interval --watch-interval hpcflow-helper-start command line option --timeout --timeout-check-interval --watch-interval hpcflow-internal-workflow command line option PATH hpcflow-internal-workflow-PATH-check-loop command line option EAR_ID LOOP_NAME hpcflow-internal-workflow-PATH-get-ear-skipped command line option EAR_ID hpcflow-internal-workflow-PATH-save-parameter command line option --stderr CMD_IDX EAR_ID NAME VALUE hpcflow-internal-workflow-PATH-set-ear-end command line option EAR_ID EXIT_CODE JS_ACT_IDX JS_IDX hpcflow-internal-workflow-PATH-set-ear-skip command line option EAR_ID hpcflow-internal-workflow-PATH-set-ear-start command line option EAR_ID hpcflow-internal-workflow-PATH-write-commands command line option EAR_ID JOBSCRIPT_IDX JS_ACTION_IDX SUBMISSION_IDX hpcflow-make command line option --format --name --no-status --overwrite --path --status --store --string --ts-fmt --ts-name-fmt --var -v TEMPLATE_FILE_OR_STR hpcflow-manage-clear-cache command line option --hostname hpcflow-manage-get-config-path command line option --config-dir hpcflow-manage-reset-config command line option --config-dir hpcflow-open-config command line option --path hpcflow-open-demo-data-cache-dir command line option --path hpcflow-open-env-source command line option --name --path hpcflow-open-known-subs command line option --path hpcflow-open-log command line option --path hpcflow-open-user-cache-dir command line option --path hpcflow-open-user-cache-hostname-dir command line option --path hpcflow-open-user-data-dir command line option --path hpcflow-open-user-data-hostname-dir command line option --path hpcflow-open-user-runtime-dir command line option --path hpcflow-open-workflow command line option --path --ref-type -r WORKFLOW_REF

hpcflow-rechunk command line option --backup --chunk-size --no-backup --no-status --ref-type --status -r WORKFLOW_REF hpcflow-show command line option --full --legend --max-recent --no-update -f -r hpcflow-submission command line option --os-info hpcflow-submission-get-known command line option --json hpcflow-submission-scheduler command line option SCHEDULER_NAME hpcflow-submission-shell-info command line option --exclude-os SHELL_NAME hpcflow-test command line option PY_TEST_ARGS hpcflow-unzip command line option --log --path WORKFLOW_PATH hpcflow-workflow command line option --ref-type -r WORKFLOW_REF hpcflow-workflow-WORKFLOW_REF-abort-run command line option --element --submission --task hpcflow-workflow-WORKFLOW_REF-get-param command line option INDEX hpcflow-workflow-WORKFLOW_REF-get-param-source command line option INDEX hpcflow-workflow-WORKFLOW_REF-is-param-set command line option INDEX hpcflow-workflow-WORKFLOW_REF-rechunk command line option --backup --chunk-size --no-backup --no-status --status hpcflow-workflow-WORKFLOW_REF-rechunk-parameter-base command line option --backup --chunk-size --no-backup --no-status --status hpcflow-workflow-WORKFLOW_REF-rechunk-runs command line option --backup --chunk-size --no-backup --no-status --status hpcflow-workflow-WORKFLOW_REF-sub command line option SUB_IDX hpcflow-workflow-WORKFLOW_REF-sub-SUB_IDX-js command line option JS_IDX hpcflow-workflow-WORKFLOW_REF-submit command line option --add-to-known --cancel --js-parallelism --no-add-to-known --no-status --print-idx --status --tasks --wait hpcflow-workflow-WORKFLOW_REF-unzip command line option --log --path hpcflow-workflow-WORKFLOW_REF-wait command line option --jobscripts -j hpcflow-workflow-WORKFLOW_REF-zip command line option --include-execute --include-rechunk-backups --log --overwrite --path hpcflow-zip command line option --include-execute --include-rechunk-backups --log --overwrite --path --ref-type -r WORKFLOW_REF hpcflow.app module hpcflow.sdk module hpcflow.sdk.app module hpcflow.sdk.cli module hpcflow.sdk.cli_common module hpcflow.sdk.config module hpcflow.sdk.config.callbacks module hpcflow.sdk.config.cli module hpcflow.sdk.config.config module hpcflow.sdk.config.config_file module hpcflow.sdk.config.errors module hpcflow.sdk.config.types module hpcflow.sdk.core module hpcflow.sdk.core.actions module hpcflow.sdk.core.app_aware module hpcflow.sdk.core.cache module hpcflow.sdk.core.command_files module hpcflow.sdk.core.commands module hpcflow.sdk.core.element module hpcflow.sdk.core.enums module hpcflow.sdk.core.environment module hpcflow.sdk.core.errors module hpcflow.sdk.core.json_like module hpcflow.sdk.core.loop module hpcflow.sdk.core.loop_cache module hpcflow.sdk.core.object_list module hpcflow.sdk.core.parameters module hpcflow.sdk.core.rule module hpcflow.sdk.core.run_dir_files module hpcflow.sdk.core.task module hpcflow.sdk.core.task_schema module hpcflow.sdk.core.test_utils module hpcflow.sdk.core.types module hpcflow.sdk.core.utils module hpcflow.sdk.core.validation module hpcflow.sdk.core.workflow module hpcflow.sdk.core.zarr_io module hpcflow.sdk.data module hpcflow.sdk.demo module hpcflow.sdk.demo.cli module hpcflow.sdk.helper module hpcflow.sdk.helper.cli module hpcflow.sdk.helper.helper module hpcflow.sdk.helper.watcher module hpcflow.sdk.log module hpcflow.sdk.persistence module hpcflow.sdk.persistence.base module hpcflow.sdk.persistence.defaults module hpcflow.sdk.persistence.discovery module hpcflow.sdk.persistence.json module hpcflow.sdk.persistence.pending module hpcflow.sdk.persistence.store_resource module hpcflow.sdk.persistence.types module hpcflow.sdk.persistence.utils module hpcflow.sdk.persistence.zarr module hpcflow.sdk.runtime module hpcflow.sdk.submission module hpcflow.sdk.submission.enums module hpcflow.sdk.submission.jobscript module hpcflow.sdk.submission.schedulers module hpcflow.sdk.submission.schedulers.direct module hpcflow.sdk.submission.schedulers.sge module hpcflow.sdk.submission.schedulers.slurm module hpcflow.sdk.submission.schedulers.utils module hpcflow.sdk.submission.shells module hpcflow.sdk.submission.shells.base module hpcflow.sdk.submission.shells.bash module hpcflow.sdk.submission.shells.os_version module hpcflow.sdk.submission.shells.powershell module hpcflow.sdk.submission.submission module hpcflow.sdk.submission.types module hpcflow.sdk.typing module HYBRID (hpcflow.sdk.core.enums.ParallelMode attribute) hydrate() (in module hpcflow.sdk.typing)

I

id (hpcflow.sdk.core.types.CreationInfo attribute) (hpcflow.sdk.persistence.types.StoreCreationInfo attribute) id_ (hpcflow.app.Element property) (hpcflow.app.ElementActionRun property) (hpcflow.app.ElementIteration property) (hpcflow.app.Workflow property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.core.workflow.Workflow property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.base.StoreElement attribute) (hpcflow.sdk.persistence.base.StoreElementIter attribute) (hpcflow.sdk.persistence.base.StoreParameter attribute) (hpcflow.sdk.persistence.base.StoreTask attribute) (hpcflow.sdk.persistence.json.JsonStoreEAR attribute) (hpcflow.sdk.persistence.json.JsonStoreElement attribute) (hpcflow.sdk.persistence.json.JsonStoreElementIter attribute) (hpcflow.sdk.persistence.json.JsonStoreTask attribute) (hpcflow.sdk.persistence.types.ElemMeta attribute) (hpcflow.sdk.persistence.types.RunMeta attribute) (hpcflow.sdk.persistence.types.TaskMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElement attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreParameter attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreTask attribute) ignore_invalid_actions() (hpcflow.app.TaskSchema class method) (hpcflow.sdk.core.task_schema.TaskSchema class method) implementation (hpcflow.app.TaskSchema attribute) (hpcflow.sdk.core.task_schema.TaskSchema attribute) IMPLICIT (hpcflow.app.ParameterPropagationMode attribute) IMPORT (hpcflow.app.InputSourceType attribute) import_() (hpcflow.app.InputSource class method) (hpcflow.sdk.core.parameters.InputSource class method) import_from_file() (hpcflow.sdk.config.config.Config method) import_ref (hpcflow.app.InputSource attribute) (hpcflow.sdk.core.parameters.InputSource attribute) in_ipython (hpcflow.sdk.runtime.RunTimeInfo attribute) in_pytest (hpcflow.sdk.runtime.RunTimeInfo attribute) InapplicableInputSourceElementIters IncompatibleParallelModeError IncompatibleSGEPEError IncompatibleSLURMArgumentsError IncompatibleSLURMPartitionError INDEX hpcflow-config-pop command line option hpcflow-workflow-WORKFLOW_REF-get-param command line option hpcflow-workflow-WORKFLOW_REF-get-param-source command line option hpcflow-workflow-WORKFLOW_REF-is-param-set command line option index (hpcflow.app.Element property) (hpcflow.app.ElementActionRun property) (hpcflow.app.ElementIteration property) (hpcflow.app.ElementSet property) (hpcflow.app.Jobscript property) (hpcflow.app.Submission property) (hpcflow.app.Task property) (hpcflow.app.WorkflowLoop property) (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.core.loop.WorkflowLoop property) (hpcflow.sdk.core.task.ElementSet property) (hpcflow.sdk.core.task.Task property) (hpcflow.sdk.core.task.WorkflowTask property) (hpcflow.sdk.persistence.base.StoreElement attribute) (hpcflow.sdk.persistence.base.StoreTask attribute) (hpcflow.sdk.persistence.json.JsonStoreElement attribute) (hpcflow.sdk.persistence.json.JsonStoreTask attribute) (hpcflow.sdk.persistence.types.ElemMeta attribute) (hpcflow.sdk.persistence.types.TaskMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElement attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreTask attribute) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.submission.Submission property) index() (in module hpcflow.sdk.core.object_list) infer_store() (in module hpcflow.sdk.persistence.utils) info() (hpcflow.app.TaskSchema method) (hpcflow.sdk.core.task_schema.TaskSchema method) init() (hpcflow.sdk.config.config.Config method) init_loop_index() (hpcflow.app.Element method) (hpcflow.sdk.core.element.Element method) init_schemas() (hpcflow.sdk.config.config.ConfigOptions method) initialise_EARs() (hpcflow.app.WorkflowTask method) (hpcflow.sdk.core.task.WorkflowTask method) inode() (hpcflow.sdk.core.utils.JSONLikeDirSnapShot method) INPUT (hpcflow.app.TaskSourceType attribute) input_file (hpcflow.app.InputFileGenerator attribute) (hpcflow.sdk.core.command_files.InputFileGenerator attribute) INPUT_FILE_GENERATOR (hpcflow.app.ActionScopeType attribute) input_file_generator() (hpcflow.app.ActionScope class method) (hpcflow.sdk.core.actions.ActionScope class method) input_file_generators (hpcflow.app.Action attribute) (hpcflow.sdk.core.actions.Action attribute) input_file_writers (hpcflow.sdk.core.types.ActParameterDependence attribute) (hpcflow.sdk.core.types.ParameterDependence attribute) input_files (hpcflow.app.Action attribute) (hpcflow.app.Element property) (hpcflow.app.ElementAction property) (hpcflow.app.ElementActionRun property) (hpcflow.app.ElementIteration property) (hpcflow.app.ElementSet attribute) (hpcflow.sdk.core.actions.Action attribute) (hpcflow.sdk.core.actions.ElementAction property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.core.task.ElementSet attribute) input_files_path (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) input_or_output (hpcflow.app.SchemaInput property) (hpcflow.app.SchemaOutput property) (hpcflow.sdk.core.parameters.SchemaInput property) (hpcflow.sdk.core.parameters.SchemaOutput property) input_path (hpcflow.app.ValueSequence property) (hpcflow.sdk.core.parameters.ValueSequence property) input_source_idx (hpcflow.app.Element property) (hpcflow.sdk.core.element.Element property) input_sources (hpcflow.app.Element property) (hpcflow.app.ElementPropagation attribute) (hpcflow.app.ElementSet attribute) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.task.ElementPropagation attribute) (hpcflow.sdk.core.task.ElementSet attribute) (hpcflow.sdk.core.types.ElementDescriptor attribute) input_statuses (hpcflow.sdk.core.types.ElementDescriptor attribute) input_task (hpcflow.sdk.core.types.IterableParam attribute) input_type (hpcflow.app.ValueSequence property) (hpcflow.sdk.core.parameters.ValueSequence property) input_types (hpcflow.app.ElementSet property) (hpcflow.app.TaskSchema property) (hpcflow.sdk.core.task.ElementSet property) (hpcflow.sdk.core.task_schema.TaskSchema property) InputFile (class in hpcflow.app) (class in hpcflow.sdk.core.command_files) InputFileGenerator (class in hpcflow.app) (class in hpcflow.sdk.core.command_files) InputFileGeneratorSource (class in hpcflow.app) (class in hpcflow.sdk.core.command_files) inputs (hpcflow.app.Element property) (hpcflow.app.ElementAction property) (hpcflow.app.ElementActionRun property) (hpcflow.app.ElementIteration property) (hpcflow.app.ElementSet attribute) (hpcflow.app.InputFileGenerator attribute) (hpcflow.app.OutputFileParser attribute) (hpcflow.app.TaskSchema attribute) (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.actions.ElementAction property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.command_files.InputFileGenerator attribute) (hpcflow.sdk.core.command_files.OutputFileParser attribute) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.core.task.ElementSet attribute) (hpcflow.sdk.core.task.WorkflowTask property) (hpcflow.sdk.core.task_schema.TaskSchema attribute) InputSource (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) InputSourceType (class in hpcflow.app) InputSourceValidationError InputStatus (class in hpcflow.sdk.core.task) InputValue (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) InputValueDuplicateSequenceAddress insert_ID (hpcflow.app.Task property) (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.task.Task property) (hpcflow.sdk.core.task.WorkflowTask property) instances (hpcflow.app.Executable attribute) (hpcflow.sdk.core.environment.Executable attribute) INTER_STATE_QUERY_DELAY (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute) InvalidIdentifier InvalidInputSourceTaskReference invocation (hpcflow.sdk.config.types.DefaultConfiguration attribute)

invocation_command (hpcflow.sdk.runtime.RunTimeInfo property) InvocationDescriptor (class in hpcflow.sdk.config.types) invoking_user_id (hpcflow.sdk.config.config.Config property) (hpcflow.sdk.config.types.ConfigMetadata attribute) is_active (hpcflow.sdk.typing.KnownSubmission attribute) is_array (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.types.ResolvedDependencies attribute) is_conda_venv (hpcflow.sdk.runtime.RunTimeInfo attribute) is_config_loaded (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) is_dict_values (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) is_dict_values_ensure_list (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) is_enum (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) is_extra (hpcflow.sdk.core.task.InputStatus property) is_file (hpcflow.app.Parameter attribute) (hpcflow.sdk.core.parameters.Parameter attribute) is_frozen (hpcflow.sdk.runtime.RunTimeInfo attribute) is_fsspec_url() (in module hpcflow.sdk.core.utils) is_in() (hpcflow.app.InputSource method) (hpcflow.sdk.core.parameters.InputSource method) is_input (hpcflow.sdk.persistence.types.FileDescriptor attribute) is_input_type_provided() (hpcflow.app.ElementSet method) (hpcflow.sdk.core.task.ElementSet method) is_input_type_required() (hpcflow.app.Action method) (hpcflow.app.Task method) (hpcflow.sdk.core.actions.Action method) (hpcflow.sdk.core.task.Task method) is_interactive (hpcflow.sdk.runtime.RunTimeInfo attribute) is_item_set() (hpcflow.sdk.config.config_file.ConfigFile method) is_jobscript_active() (hpcflow.app.DirectPosix method) (hpcflow.app.DirectWindows method) (hpcflow.app.QueuedScheduler method) (hpcflow.app.SGEPosix method) (hpcflow.app.SlurmPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectScheduler method) (hpcflow.sdk.submission.schedulers.direct.DirectWindows method) (hpcflow.sdk.submission.schedulers.QueuedScheduler method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix method) is_multi (hpcflow.sdk.core.types.RelevantData attribute) is_multiple (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) is_num_cores_supported() (hpcflow.app.DirectPosix static method) (hpcflow.app.DirectWindows static method) (hpcflow.app.QueuedScheduler static method) (hpcflow.app.SGEPosix static method) (hpcflow.app.SlurmPosix static method) (hpcflow.sdk.submission.schedulers.direct.DirectPosix static method) (hpcflow.sdk.submission.schedulers.direct.DirectScheduler static method) (hpcflow.sdk.submission.schedulers.direct.DirectWindows static method) (hpcflow.sdk.submission.schedulers.QueuedScheduler static method) (hpcflow.sdk.submission.schedulers.Scheduler static method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix static method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix static method) is_parallel (hpcflow.app.ElementResources property) (hpcflow.sdk.core.element.ElementResources property) is_parameter_set() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) is_pending (hpcflow.app.Element property) (hpcflow.app.ElementActionRun property) (hpcflow.app.ElementIteration property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.base.StoreElement attribute) (hpcflow.sdk.persistence.base.StoreElementIter attribute) (hpcflow.sdk.persistence.base.StoreParameter attribute) (hpcflow.sdk.persistence.base.StoreTask attribute) (hpcflow.sdk.persistence.json.JsonStoreEAR attribute) (hpcflow.sdk.persistence.json.JsonStoreElement attribute) (hpcflow.sdk.persistence.json.JsonStoreElementIter attribute) (hpcflow.sdk.persistence.json.JsonStoreTask attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElement attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreParameter attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreTask attribute) is_provided (hpcflow.sdk.core.task.InputStatus attribute) is_regex (hpcflow.app.FileNameSpec attribute) (hpcflow.sdk.core.command_files.FileNameSpec attribute) is_required (hpcflow.sdk.core.task.InputStatus attribute) is_set (hpcflow.app.ElementParameter property) (hpcflow.sdk.core.element.ElementParameter property) (hpcflow.sdk.core.types.RelevantData attribute) (hpcflow.sdk.persistence.base.StoreParameter attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreParameter attribute) is_single_attribute (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) is_snippet_script() (hpcflow.app.Action static method) (hpcflow.sdk.core.actions.Action static method) is_sub_value (hpcflow.app.InputValue property) (hpcflow.app.ValueSequence property) (hpcflow.sdk.core.parameters.InputValue property) (hpcflow.sdk.core.parameters.ValueSequence property) is_submittable (hpcflow.sdk.persistence.base.PersistentStore property) (hpcflow.sdk.persistence.json.JSONPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore property) is_submitted (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) is_template_components_loaded (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) is_valid (hpcflow.sdk.core.validation.ValidatedData property) is_venv (hpcflow.sdk.runtime.RunTimeInfo attribute) isdir() (hpcflow.sdk.core.utils.JSONLikeDirSnapShot method) items() (hpcflow.sdk.config.types.ConfigDescriptor method) (hpcflow.sdk.config.types.ConfigMetadata method) (hpcflow.sdk.config.types.DefaultConfiguration method) (hpcflow.sdk.config.types.InvocationDescriptor method) (hpcflow.sdk.config.types.SchedulerConfigDescriptor method) (hpcflow.sdk.config.types.SGEParallelEnvsDescriptor method) (hpcflow.sdk.config.types.ShellConfigDescriptor method) (hpcflow.sdk.config.types.SLURMPartitionsDescriptor method) (hpcflow.sdk.core.loop_cache.LoopIndex method) (hpcflow.sdk.core.types.ActParameterDependence method) (hpcflow.sdk.core.types.CreationInfo method) (hpcflow.sdk.core.types.DependentDescriptor method) (hpcflow.sdk.core.types.ElementDescriptor method) (hpcflow.sdk.core.types.IterableParam method) (hpcflow.sdk.core.types.JobscriptSubmissionFailureArgs method) (hpcflow.sdk.core.types.LabelInfo method) (hpcflow.sdk.core.types.LabellingDescriptor method) (hpcflow.sdk.core.types.MultiplicityDescriptor method) (hpcflow.sdk.core.types.ParameterDependence method) (hpcflow.sdk.core.types.ParentPath method) (hpcflow.sdk.core.types.Pending method) (hpcflow.sdk.core.types.RelevantData method) (hpcflow.sdk.core.types.RepeatsDescriptor method) (hpcflow.sdk.core.types.ResourceSpecArgs method) (hpcflow.sdk.core.types.RuleArgs method) (hpcflow.sdk.core.types.SchemaInputKwargs method) (hpcflow.sdk.core.types.ScriptData method) (hpcflow.sdk.core.types.SiblingPath method) (hpcflow.sdk.core.types.UpdatePath method) (hpcflow.sdk.core.types.WorkflowTemplateTaskData method) (hpcflow.sdk.persistence.types.ElemMeta method) (hpcflow.sdk.persistence.types.EncodedStoreParameter method) (hpcflow.sdk.persistence.types.File method) (hpcflow.sdk.persistence.types.FileDescriptor method) (hpcflow.sdk.persistence.types.IterMeta method) (hpcflow.sdk.persistence.types.LoopDescriptor method) (hpcflow.sdk.persistence.types.Metadata method) (hpcflow.sdk.persistence.types.PersistenceCache method) (hpcflow.sdk.persistence.types.RunMeta method) (hpcflow.sdk.persistence.types.StoreCreationInfo method) (hpcflow.sdk.persistence.types.TaskMeta method) (hpcflow.sdk.persistence.types.TemplateMeta method) (hpcflow.sdk.persistence.types.TypeLookup method) (hpcflow.sdk.persistence.types.ZarrAttrsDict method) (hpcflow.sdk.submission.types.JobScriptCreationArguments method) (hpcflow.sdk.submission.types.JobScriptDescriptor method) (hpcflow.sdk.submission.types.JobscriptHeaderArgs method) (hpcflow.sdk.submission.types.ResolvedDependencies method) (hpcflow.sdk.submission.types.SchedulerRef method) (hpcflow.sdk.submission.types.SubmissionPart method) (hpcflow.sdk.typing.KnownSubmission method) (hpcflow.sdk.typing.KnownSubmissionItem method) (hpcflow.sdk.typing.ParamSource method) (hpcflow.sdk.typing.TemplateComponents method) iter_iter_dependencies (hpcflow.sdk.core.cache.DependencyCache attribute) iter_run_dependencies (hpcflow.sdk.core.cache.DependencyCache attribute) iterable_parameters (hpcflow.app.WorkflowLoop property) (hpcflow.sdk.core.loop.WorkflowLoop property) (hpcflow.sdk.persistence.types.LoopDescriptor attribute) IterableParam (class in hpcflow.sdk.core.types) iteration_IDs (hpcflow.app.Element property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.persistence.base.StoreElement attribute) (hpcflow.sdk.persistence.json.JsonStoreElement attribute) (hpcflow.sdk.persistence.types.ElemMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElement attribute) iterations (hpcflow.app.Element property) (hpcflow.sdk.core.cache.DependencyCache attribute) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.loop_cache.LoopCache attribute) IterMeta (class in hpcflow.sdk.persistence.types) iters (hpcflow.sdk.persistence.types.Metadata attribute)

J

job_ID_parse_exc (hpcflow.sdk.core.types.JobscriptSubmissionFailureArgs attribute) Jobscript (class in hpcflow.app) (class in hpcflow.sdk.submission.jobscript) JOBSCRIPT_IDX hpcflow-internal-workflow-PATH-write-commands command line option jobscript_indices (hpcflow.app.Submission property) (hpcflow.sdk.submission.submission.Submission property) jobscript_name (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) jobscript_parallelism (hpcflow.sdk.persistence.base.PersistentStoreFeatures attribute) jobscript_path (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) JobScriptCreationArguments (class in hpcflow.sdk.submission.types) JobScriptDescriptor (class in hpcflow.sdk.submission.types) JobscriptElementState (class in hpcflow.sdk.submission.enums) JobscriptHeaderArgs (class in hpcflow.sdk.submission.types) jobscripts (hpcflow.app.Submission property) (hpcflow.sdk.submission.submission.Submission property) (hpcflow.sdk.submission.types.SubmissionPart attribute) (hpcflow.sdk.typing.KnownSubmissionItem attribute) jobscripts_to_list() (in module hpcflow.sdk.submission.jobscript) JobscriptSubmissionFailure JobscriptSubmissionFailureArgs (class in hpcflow.sdk.core.types) join() (hpcflow.sdk.helper.watcher.MonitorController method) JS_ACT_IDX hpcflow-internal-workflow-PATH-set-ear-end command line option JS_ACTION_IDX hpcflow-internal-workflow-PATH-write-commands command line option JS_DIRECT_HEADER (hpcflow.sdk.submission.shells.base.Shell attribute) (hpcflow.sdk.submission.shells.bash.Bash attribute) (hpcflow.sdk.submission.shells.bash.WSLBash attribute) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell attribute) JS_ELEMENT_ARRAY (hpcflow.sdk.submission.shells.base.Shell attribute) (hpcflow.sdk.submission.shells.bash.Bash attribute) (hpcflow.sdk.submission.shells.bash.WSLBash attribute) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell attribute) JS_ELEMENT_LOOP (hpcflow.sdk.submission.shells.base.Shell attribute) (hpcflow.sdk.submission.shells.bash.Bash attribute) (hpcflow.sdk.submission.shells.bash.WSLBash attribute) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell attribute) js_element_mapping (hpcflow.sdk.submission.types.ResolvedDependencies attribute) JS_ENV_SETUP_INDENT (hpcflow.sdk.submission.shells.base.Shell attribute) (hpcflow.sdk.submission.shells.bash.Bash attribute) (hpcflow.sdk.submission.shells.bash.WSLBash attribute) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell attribute)

JS_EXT (hpcflow.sdk.submission.shells.base.Shell attribute) (hpcflow.sdk.submission.shells.bash.Bash attribute) (hpcflow.sdk.submission.shells.bash.WSLBash attribute) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell attribute) JS_HEADER (hpcflow.sdk.submission.shells.base.Shell attribute) (hpcflow.sdk.submission.shells.bash.Bash attribute) (hpcflow.sdk.submission.shells.bash.WSLBash attribute) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell attribute) JS_IDX hpcflow-internal-workflow-PATH-set-ear-end command line option hpcflow-workflow-WORKFLOW_REF-sub-SUB_IDX-js command line option js_idx (hpcflow.sdk.core.types.JobscriptSubmissionFailureArgs attribute) (hpcflow.sdk.submission.types.JobscriptHeaderArgs attribute) JS_INDENT (hpcflow.sdk.submission.shells.base.Shell attribute) (hpcflow.sdk.submission.shells.bash.Bash attribute) (hpcflow.sdk.submission.shells.bash.WSLBash attribute) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell attribute) JS_MAIN (hpcflow.sdk.submission.shells.base.Shell attribute) (hpcflow.sdk.submission.shells.bash.Bash attribute) (hpcflow.sdk.submission.shells.bash.WSLBash attribute) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell attribute) JS_parallelism (hpcflow.app.Submission property) (hpcflow.sdk.submission.submission.Submission property) js_parallelism_option() (in module hpcflow.sdk.cli_common) js_path (hpcflow.sdk.core.types.JobscriptSubmissionFailureArgs attribute) js_refs (hpcflow.sdk.submission.types.SchedulerRef attribute) JS_SCHEDULER_HEADER (hpcflow.sdk.submission.shells.base.Shell attribute) (hpcflow.sdk.submission.shells.bash.Bash attribute) (hpcflow.sdk.submission.shells.bash.WSLBash attribute) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell attribute) JS_SHEBANG (hpcflow.sdk.submission.shells.base.Shell attribute) (hpcflow.sdk.submission.shells.bash.Bash attribute) (hpcflow.sdk.submission.shells.bash.WSLBash attribute) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell attribute) json_like_name (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) JSONFileStoreResource (class in hpcflow.sdk.persistence.store_resource) JSONLike (class in hpcflow.sdk.core.json_like) JSONLikeDirSnapShot (class in hpcflow.sdk.core.utils) JSONPersistentStore (class in hpcflow.sdk.persistence.json) JsonStoreEAR (class in hpcflow.sdk.persistence.json) JsonStoreElement (class in hpcflow.sdk.persistence.json) JsonStoreElementIter (class in hpcflow.sdk.persistence.json) JsonStoreTask (class in hpcflow.sdk.persistence.json) JSRefType (in module hpcflow.sdk.submission.schedulers)

K

keys() (hpcflow.sdk.config.types.ConfigDescriptor method) (hpcflow.sdk.config.types.ConfigMetadata method) (hpcflow.sdk.config.types.DefaultConfiguration method) (hpcflow.sdk.config.types.InvocationDescriptor method) (hpcflow.sdk.config.types.SchedulerConfigDescriptor method) (hpcflow.sdk.config.types.SGEParallelEnvsDescriptor method) (hpcflow.sdk.config.types.ShellConfigDescriptor method) (hpcflow.sdk.config.types.SLURMPartitionsDescriptor method) (hpcflow.sdk.core.loop_cache.LoopIndex method) (hpcflow.sdk.core.types.ActParameterDependence method) (hpcflow.sdk.core.types.CreationInfo method) (hpcflow.sdk.core.types.DependentDescriptor method) (hpcflow.sdk.core.types.ElementDescriptor method) (hpcflow.sdk.core.types.IterableParam method) (hpcflow.sdk.core.types.JobscriptSubmissionFailureArgs method) (hpcflow.sdk.core.types.LabelInfo method) (hpcflow.sdk.core.types.LabellingDescriptor method) (hpcflow.sdk.core.types.MultiplicityDescriptor method) (hpcflow.sdk.core.types.ParameterDependence method) (hpcflow.sdk.core.types.ParentPath method) (hpcflow.sdk.core.types.Pending method) (hpcflow.sdk.core.types.RelevantData method) (hpcflow.sdk.core.types.RepeatsDescriptor method) (hpcflow.sdk.core.types.ResourceSpecArgs method) (hpcflow.sdk.core.types.RuleArgs method) (hpcflow.sdk.core.types.SchemaInputKwargs method) (hpcflow.sdk.core.types.ScriptData method) (hpcflow.sdk.core.types.SiblingPath method) (hpcflow.sdk.core.types.UpdatePath method) (hpcflow.sdk.core.types.WorkflowTemplateTaskData method) (hpcflow.sdk.persistence.types.ElemMeta method) (hpcflow.sdk.persistence.types.EncodedStoreParameter method) (hpcflow.sdk.persistence.types.File method) (hpcflow.sdk.persistence.types.FileDescriptor method) (hpcflow.sdk.persistence.types.IterMeta method) (hpcflow.sdk.persistence.types.LoopDescriptor method) (hpcflow.sdk.persistence.types.Metadata method) (hpcflow.sdk.persistence.types.PersistenceCache method) (hpcflow.sdk.persistence.types.RunMeta method) (hpcflow.sdk.persistence.types.StoreCreationInfo method) (hpcflow.sdk.persistence.types.TaskMeta method) (hpcflow.sdk.persistence.types.TemplateMeta method) (hpcflow.sdk.persistence.types.TypeLookup method) (hpcflow.sdk.persistence.types.ZarrAttrsDict method) (hpcflow.sdk.submission.types.JobScriptCreationArguments method) (hpcflow.sdk.submission.types.JobScriptDescriptor method) (hpcflow.sdk.submission.types.JobscriptHeaderArgs method) (hpcflow.sdk.submission.types.ResolvedDependencies method) (hpcflow.sdk.submission.types.SchedulerRef method) (hpcflow.sdk.submission.types.SubmissionPart method) (hpcflow.sdk.typing.KnownSubmission method) (hpcflow.sdk.typing.KnownSubmissionItem method) (hpcflow.sdk.typing.ParamSource method) (hpcflow.sdk.typing.TemplateComponents method)

kill_proc_tree() (in module hpcflow.sdk.helper.helper) KNOWN_NAME hpcflow-config-init command line option known_subs_file_path (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) KnownSubmission (class in hpcflow.sdk.typing) KnownSubmissionItem (class in hpcflow.sdk.typing) kwargs (hpcflow.app.ActionScope attribute) (hpcflow.sdk.core.actions.ActionScope attribute)

L

label (hpcflow.app.Executable attribute) (hpcflow.app.FileSpec attribute) (hpcflow.app.InputValue attribute) (hpcflow.app.OutputLabel attribute) (hpcflow.app.ValueSequence attribute) (hpcflow.sdk.core.command_files.FileSpec attribute) (hpcflow.sdk.core.environment.Executable attribute) (hpcflow.sdk.core.parameters.InputValue attribute) (hpcflow.sdk.core.parameters.ValueSequence attribute) (hpcflow.sdk.core.task.OutputLabel attribute) LabelInfo (class in hpcflow.sdk.core.types) labelled_info() (hpcflow.app.SchemaInput method) (hpcflow.sdk.core.parameters.SchemaInput method) labelled_type (hpcflow.app.InputValue property) (hpcflow.app.ValueSequence property) (hpcflow.sdk.core.parameters.InputValue property) (hpcflow.sdk.core.parameters.ValueSequence property) (hpcflow.sdk.core.types.LabellingDescriptor attribute) LabellingDescriptor (class in hpcflow.sdk.core.types) labels (hpcflow.app.SchemaInput attribute) (hpcflow.sdk.core.parameters.SchemaInput attribute) (hpcflow.sdk.core.types.SchemaInputKwargs attribute) latest_iteration (hpcflow.app.Element property) (hpcflow.sdk.core.element.Element property) linspace_rect() (in module hpcflow.sdk.core.utils) linux_release_file (hpcflow.sdk.config.config.Config attribute) (hpcflow.sdk.submission.shells.bash.Bash property) (hpcflow.sdk.submission.shells.bash.WSLBash property) list_attrs() (hpcflow.app.CommandFilesList method) (hpcflow.app.EnvironmentsList method) (hpcflow.app.ExecutablesList method) (hpcflow.app.GroupList method) (hpcflow.app.ParametersList method) (hpcflow.app.TaskList method) (hpcflow.app.TaskSchemasList method) (hpcflow.app.TaskTemplateList method) (hpcflow.app.WorkflowLoopList method) (hpcflow.app.WorkflowTaskList method) (hpcflow.sdk.core.object_list.AppDataList method) (hpcflow.sdk.core.object_list.CommandFilesList method) (hpcflow.sdk.core.object_list.DotAccessObjectList method) (hpcflow.sdk.core.object_list.EnvironmentsList method) (hpcflow.sdk.core.object_list.ExecutablesList method) (hpcflow.sdk.core.object_list.GroupList method) (hpcflow.sdk.core.object_list.ParametersList method) (hpcflow.sdk.core.object_list.TaskList method) (hpcflow.sdk.core.object_list.TaskSchemasList method) (hpcflow.sdk.core.object_list.TaskTemplateList method) (hpcflow.sdk.core.object_list.WorkflowLoopList method) (hpcflow.sdk.core.object_list.WorkflowTaskList method) list_demo_data_files() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) list_demo_workflows() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) list_to_dict() (in module hpcflow.sdk.core.utils) ListAny (in module hpcflow.sdk.persistence.zarr)

load_builtin_template_component_data() (hpcflow.sdk.app.App class method) (hpcflow.sdk.app.BaseApp class method) load_config() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) load_demo_workflow() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) load_template_components() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) LOCAL (hpcflow.app.InputSourceType attribute) local() (hpcflow.app.InputSource class method) (hpcflow.sdk.core.parameters.InputSource class method) local_id (hpcflow.sdk.typing.KnownSubmission attribute) (hpcflow.sdk.typing.KnownSubmissionItem attribute) log (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) log_console_level (hpcflow.sdk.config.config.Config attribute) log_file_level (hpcflow.sdk.config.config.Config attribute) log_file_path (hpcflow.sdk.config.config.Config property) (hpcflow.sdk.config.types.ConfigDescriptor attribute) logger (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) (hpcflow.sdk.config.config_file.ConfigFile attribute) (hpcflow.sdk.log.AppLog attribute) (hpcflow.sdk.persistence.base.PersistentStore property) (hpcflow.sdk.persistence.json.JSONPersistentStore property) (hpcflow.sdk.persistence.pending.PendingChanges property) (hpcflow.sdk.persistence.store_resource.JSONFileStoreResource property) (hpcflow.sdk.persistence.store_resource.StoreResource property) (hpcflow.sdk.persistence.store_resource.ZarrAttrsStoreResource property) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore property) (hpcflow.sdk.runtime.RunTimeInfo attribute) Loop (class in hpcflow.app) (class in hpcflow.sdk.core.loop) loop_idx (hpcflow.app.ElementIteration property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.persistence.base.StoreElementIter attribute) (hpcflow.sdk.persistence.json.JsonStoreElementIter attribute) (hpcflow.sdk.persistence.types.IterMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter attribute) LOOP_NAME hpcflow-internal-workflow-PATH-check-loop command line option loop_template (hpcflow.sdk.persistence.types.LoopDescriptor attribute) LoopAlreadyExistsError LoopCache (class in hpcflow.sdk.core.loop_cache) LoopDescriptor (class in hpcflow.sdk.persistence.types) LoopIndex (class in hpcflow.sdk.core.loop_cache) loops (hpcflow.app.Workflow property) (hpcflow.app.WorkflowTemplate attribute) (hpcflow.sdk.core.types.Pending attribute) (hpcflow.sdk.core.workflow.Workflow property) (hpcflow.sdk.core.workflow.WorkflowTemplate attribute) (hpcflow.sdk.persistence.types.Metadata attribute) (hpcflow.sdk.persistence.types.TemplateMeta attribute) (hpcflow.sdk.persistence.types.ZarrAttrsDict attribute) LoopTaskSubsetError

M

machine (hpcflow.sdk.config.config.Config property) (hpcflow.sdk.config.types.ConfigDescriptor attribute) MAIN (hpcflow.app.ActionScopeType attribute) main() (hpcflow.app.ActionScope class method) (hpcflow.sdk.core.actions.ActionScope class method) make_actions() (in module hpcflow.sdk.core.test_utils) make_and_submit_demo_workflow (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) make_and_submit_demo_workflow() (in module hpcflow.app) make_and_submit_workflow (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) make_and_submit_workflow() (in module hpcflow.app) make_artifact_dirs() (hpcflow.app.Jobscript method) (hpcflow.sdk.submission.jobscript.Jobscript method) make_cli() (in module hpcflow.sdk.cli) make_demo_workflow (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) make_demo_workflow() (in module hpcflow.app) make_parameters() (in module hpcflow.sdk.core.test_utils) make_persistent() (hpcflow.app.InputFile method) (hpcflow.app.InputFileGeneratorSource method) (hpcflow.app.InputValue method) (hpcflow.app.OutputFileParserSource method) (hpcflow.app.ResourceSpec method) (hpcflow.app.TaskSchema method) (hpcflow.app.ValuePerturbation method) (hpcflow.app.ValueSequence method) (hpcflow.sdk.core.command_files.InputFile method) (hpcflow.sdk.core.command_files.InputFileGeneratorSource method) (hpcflow.sdk.core.command_files.OutputFileParserSource method) (hpcflow.sdk.core.parameters.AbstractInputValue method) (hpcflow.sdk.core.parameters.InputValue method) (hpcflow.sdk.core.parameters.ResourceSpec method) (hpcflow.sdk.core.parameters.ValuePerturbation method) (hpcflow.sdk.core.parameters.ValueSequence method) (hpcflow.sdk.core.task_schema.TaskSchema method) make_schemas() (in module hpcflow.sdk.core.test_utils) make_status_opt() (in module hpcflow.sdk.cli_common) make_tasks() (in module hpcflow.sdk.core.test_utils) make_test_data_YAML_workflow() (in module hpcflow.sdk.core.test_utils) make_test_data_YAML_workflow_template() (in module hpcflow.sdk.core.test_utils) make_test_store_from_spec() (hpcflow.sdk.persistence.json.JSONPersistentStore class method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore class method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore class method) make_workflow (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) make_workflow() (in module hpcflow.app) (in module hpcflow.sdk.core.test_utils) make_workflow_id() (in module hpcflow.sdk.core.utils) MalformedNestingOrderPath MalformedParameterPathError MalformedWorkflowError masked_arrays (hpcflow.sdk.persistence.types.TypeLookup attribute) match (hpcflow.sdk.config.types.InvocationDescriptor attribute) max_array_items (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.types.ResourceSpecArgs attribute) MAX_DEPTH (in module hpcflow.sdk.core.zarr_io) MayNeedObjectError merge_envs (hpcflow.app.ElementSet attribute) (hpcflow.app.Task attribute) (hpcflow.app.WorkflowTemplate attribute) (hpcflow.sdk.core.task.ElementSet attribute) (hpcflow.sdk.core.task.Task attribute) (hpcflow.sdk.core.workflow.WorkflowTemplate attribute) merge_jobscripts_across_tasks() (in module hpcflow.sdk.submission.jobscript) merge_one() (hpcflow.app.ResourceList method) (hpcflow.sdk.core.object_list.ResourceList method) merge_other() (hpcflow.app.ResourceList method) (hpcflow.sdk.core.object_list.ResourceList method) merge_resources (hpcflow.app.WorkflowTemplate attribute) (hpcflow.sdk.core.workflow.WorkflowTemplate attribute) Metadata (class in hpcflow.sdk.persistence.types) metadata (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.json.JsonStoreEAR attribute) (hpcflow.sdk.persistence.types.RunMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) method (hpcflow.app.TaskSchema attribute) (hpcflow.sdk.core.task_schema.TaskSchema attribute) MissingActionEnvironment MissingCompatibleActionEnvironment MissingElementGroup MissingEnvironmentError MissingEnvironmentExecutableError MissingEnvironmentExecutableInstanceError MissingEnvironmentFileError MissingInputs MissingParameterData MissingStoreEARError

MissingStoreElementError MissingStoreElementIterationError MissingStoreTaskError MissingTaskSchemaFileError MissingVariableSubstitutionError module hpcflow.app hpcflow.sdk hpcflow.sdk.app hpcflow.sdk.cli hpcflow.sdk.cli_common hpcflow.sdk.config hpcflow.sdk.config.callbacks hpcflow.sdk.config.cli hpcflow.sdk.config.config hpcflow.sdk.config.config_file hpcflow.sdk.config.errors hpcflow.sdk.config.types hpcflow.sdk.core hpcflow.sdk.core.actions hpcflow.sdk.core.app_aware hpcflow.sdk.core.cache hpcflow.sdk.core.command_files hpcflow.sdk.core.commands hpcflow.sdk.core.element hpcflow.sdk.core.enums hpcflow.sdk.core.environment hpcflow.sdk.core.errors hpcflow.sdk.core.json_like hpcflow.sdk.core.loop hpcflow.sdk.core.loop_cache hpcflow.sdk.core.object_list hpcflow.sdk.core.parameters hpcflow.sdk.core.rule hpcflow.sdk.core.run_dir_files hpcflow.sdk.core.task hpcflow.sdk.core.task_schema hpcflow.sdk.core.test_utils hpcflow.sdk.core.types hpcflow.sdk.core.utils hpcflow.sdk.core.validation hpcflow.sdk.core.workflow hpcflow.sdk.core.zarr_io hpcflow.sdk.data hpcflow.sdk.demo hpcflow.sdk.demo.cli hpcflow.sdk.helper hpcflow.sdk.helper.cli hpcflow.sdk.helper.helper hpcflow.sdk.helper.watcher hpcflow.sdk.log hpcflow.sdk.persistence hpcflow.sdk.persistence.base hpcflow.sdk.persistence.defaults hpcflow.sdk.persistence.discovery hpcflow.sdk.persistence.json hpcflow.sdk.persistence.pending hpcflow.sdk.persistence.store_resource hpcflow.sdk.persistence.types hpcflow.sdk.persistence.utils hpcflow.sdk.persistence.zarr hpcflow.sdk.runtime hpcflow.sdk.submission hpcflow.sdk.submission.enums hpcflow.sdk.submission.jobscript hpcflow.sdk.submission.schedulers hpcflow.sdk.submission.schedulers.direct hpcflow.sdk.submission.schedulers.sge hpcflow.sdk.submission.schedulers.slurm hpcflow.sdk.submission.schedulers.utils hpcflow.sdk.submission.shells hpcflow.sdk.submission.shells.base hpcflow.sdk.submission.shells.bash hpcflow.sdk.submission.shells.os_version hpcflow.sdk.submission.shells.powershell hpcflow.sdk.submission.submission hpcflow.sdk.submission.types hpcflow.sdk.typing module (hpcflow.sdk.app.App attribute) (hpcflow.sdk.app.BaseApp attribute) MonitorController (class in hpcflow.sdk.helper.watcher) mro() (hpcflow.sdk.app.Singleton method) mtime() (hpcflow.sdk.core.utils.JSONLikeDirSnapShot method) multi_input_types (hpcflow.app.TaskSchema property) (hpcflow.sdk.core.task_schema.TaskSchema property) multiple (hpcflow.app.SchemaInput attribute) (hpcflow.sdk.core.parameters.SchemaInput attribute) (hpcflow.sdk.core.types.SchemaInputKwargs attribute) MultipleEnvironmentsError multiplicative_factor (hpcflow.app.ValuePerturbation attribute) (hpcflow.sdk.core.parameters.ValuePerturbation attribute) multiplicity (hpcflow.sdk.core.types.MultiplicityDescriptor attribute) MultiplicityDescriptor (class in hpcflow.sdk.core.types)

N

NAME hpcflow-config-add-scheduler command line option hpcflow-config-add-shell command line option hpcflow-config-append command line option hpcflow-config-get command line option hpcflow-config-pop command line option hpcflow-config-prepend command line option hpcflow-config-set command line option hpcflow-config-unset command line option hpcflow-config-update command line option hpcflow-configure-env command line option hpcflow-internal-workflow-PATH-save-parameter command line option name (hpcflow.app.ElementGroup attribute) (hpcflow.app.Environment attribute) (hpcflow.app.FileNameSpec attribute) (hpcflow.app.FileSpec attribute) (hpcflow.app.Loop property) (hpcflow.app.Task property) (hpcflow.app.TaskObjective attribute) (hpcflow.app.TaskSchema property) (hpcflow.app.ValuePerturbation attribute) (hpcflow.app.Workflow property) (hpcflow.app.WorkflowLoop property) (hpcflow.app.WorkflowTask property) (hpcflow.app.WorkflowTemplate attribute) (hpcflow.sdk.app.App attribute) (hpcflow.sdk.app.BaseApp attribute) (hpcflow.sdk.core.command_files.FileNameSpec attribute) (hpcflow.sdk.core.command_files.FileSpec attribute) (hpcflow.sdk.core.element.ElementGroup attribute) (hpcflow.sdk.core.environment.Environment attribute) (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) (hpcflow.sdk.core.loop.Loop property) (hpcflow.sdk.core.loop.WorkflowLoop property) (hpcflow.sdk.core.parameters.ValuePerturbation attribute) (hpcflow.sdk.core.task.Task property) (hpcflow.sdk.core.task.WorkflowTask property) (hpcflow.sdk.core.task_schema.TaskObjective attribute) (hpcflow.sdk.core.task_schema.TaskSchema property) (hpcflow.sdk.core.types.RepeatsDescriptor attribute) (hpcflow.sdk.core.validation.PreparedConditionCallable property) (hpcflow.sdk.core.workflow.Workflow property) (hpcflow.sdk.core.workflow.WorkflowTemplate attribute) (hpcflow.sdk.persistence.types.Metadata attribute) (hpcflow.sdk.persistence.types.ZarrAttrsDict attribute) (hpcflow.sdk.runtime.RunTimeInfo attribute) name_option() (in module hpcflow.sdk.cli_common) names() (hpcflow.app.TaskSourceType class method) needs_submit (hpcflow.app.Submission property) (hpcflow.sdk.submission.submission.Submission property) nesting_order (hpcflow.app.ElementPropagation attribute) (hpcflow.app.ElementSet attribute) (hpcflow.app.ValueSequence attribute) (hpcflow.sdk.core.parameters.ValueSequence attribute) (hpcflow.sdk.core.task.ElementPropagation attribute) (hpcflow.sdk.core.task.ElementSet attribute) (hpcflow.sdk.core.types.MultiplicityDescriptor attribute) (hpcflow.sdk.core.types.RepeatsDescriptor attribute) NEVER (hpcflow.app.ParameterPropagationMode attribute) new_empty_loop() (hpcflow.app.WorkflowLoop class method) (hpcflow.sdk.core.loop.WorkflowLoop class method) new_empty_task() (hpcflow.app.WorkflowTask class method) (hpcflow.sdk.core.task.WorkflowTask class method) NoAvailableElementSetsError NoCLIFormatMethodError NoCoincidentInputSources NoCompatibleSGEPEError non_iterable_parameters (hpcflow.app.Loop property) (hpcflow.sdk.core.loop.Loop property) non_universal_input_types (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) normalise() (hpcflow.app.ResourceList class method) (hpcflow.sdk.core.object_list.ResourceList class method) normalise_timestamp() (in module hpcflow.sdk.core.utils) normalised_files_path (hpcflow.app.InputFile property) (hpcflow.sdk.core.command_files.InputFile property) normalised_inputs_path (hpcflow.app.InputValue property) (hpcflow.app.ValueSequence property) (hpcflow.sdk.core.parameters.InputValue property) (hpcflow.sdk.core.parameters.ValueSequence property) normalised_path (hpcflow.app.InputFile property) (hpcflow.app.InputFileGeneratorSource property) (hpcflow.app.InputValue property) (hpcflow.app.OutputFileParserSource property) (hpcflow.app.ResourceSpec property) (hpcflow.app.ValuePerturbation property) (hpcflow.app.ValueSequence property) (hpcflow.sdk.core.command_files.InputFile property) (hpcflow.sdk.core.command_files.InputFileGeneratorSource property) (hpcflow.sdk.core.command_files.OutputFileParserSource property) (hpcflow.sdk.core.parameters.AbstractInputValue property) (hpcflow.sdk.core.parameters.InputValue property) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.parameters.ValuePerturbation property) (hpcflow.sdk.core.parameters.ValueSequence property)

normalised_resources_path (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.parameters.ResourceSpec property) NotSubmitMachineError nth_key() (in module hpcflow.sdk.core.utils) nth_value() (in module hpcflow.sdk.core.utils) NULL (hpcflow.sdk.core.parameters.NullDefault attribute) NullDefault (class in hpcflow.sdk.core.parameters) num_actions (hpcflow.app.Jobscript property) (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.task.WorkflowTask property) (hpcflow.sdk.submission.jobscript.Jobscript property) num_added_iterations (hpcflow.app.WorkflowLoop property) (hpcflow.sdk.core.loop.WorkflowLoop property) (hpcflow.sdk.persistence.types.LoopDescriptor attribute) num_added_tasks (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) (hpcflow.sdk.persistence.types.Metadata attribute) (hpcflow.sdk.persistence.types.ZarrAttrsDict attribute) num_all_schema_actions (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) num_cores (hpcflow.app.ElementResources attribute) (hpcflow.app.ExecutableInstance attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.config.types.SGEParallelEnvsDescriptor attribute) (hpcflow.sdk.config.types.SLURMPartitionsDescriptor attribute) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.environment.ExecutableInstance attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.types.ResourceSpecArgs attribute) num_cores_per_node (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.config.types.SLURMPartitionsDescriptor attribute) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.types.ResourceSpecArgs attribute) num_EARs (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) (hpcflow.sdk.persistence.types.PersistenceCache attribute) num_EARs_cache (hpcflow.sdk.persistence.base.PersistentStore property) (hpcflow.sdk.persistence.json.JSONPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore property) num_element_iterations (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) num_element_sets (hpcflow.app.Task property) (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.task.Task property) (hpcflow.sdk.core.task.WorkflowTask property) num_elements (hpcflow.app.Jobscript property) (hpcflow.app.Workflow property) (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.task.WorkflowTask property) (hpcflow.sdk.core.workflow.Workflow property) (hpcflow.sdk.submission.jobscript.Jobscript property) num_iterations (hpcflow.app.Loop property) (hpcflow.app.WorkflowLoop property) (hpcflow.sdk.core.loop.Loop property) (hpcflow.sdk.core.loop.WorkflowLoop property) num_js_elements (hpcflow.sdk.submission.types.SchedulerRef attribute) num_loops (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) num_nodes (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.config.types.SLURMPartitionsDescriptor attribute) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.types.ResourceSpecArgs attribute) num_runs (hpcflow.app.ElementAction property) (hpcflow.sdk.core.actions.ElementAction property) NUM_STATE_QUERY_TRIES (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute) num_submissions (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) num_tasks (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) (hpcflow.sdk.persistence.types.PersistenceCache attribute) num_tasks_cache (hpcflow.sdk.persistence.base.PersistentStore property) (hpcflow.sdk.persistence.json.JSONPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore property) num_threads (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.types.ResourceSpecArgs attribute) number (hpcflow.app.ElementRepeats attribute) (hpcflow.sdk.core.element.ElementRepeats attribute) (hpcflow.sdk.core.types.RepeatsDescriptor attribute) NumCores (class in hpcflow.app) (class in hpcflow.sdk.core.environment) Numeric (in module hpcflow.sdk.core.types)

O

objective (hpcflow.app.Task property) (hpcflow.app.TaskSchema attribute) (hpcflow.sdk.core.task.Task property) (hpcflow.sdk.core.task_schema.TaskSchema attribute) ObjectList (class in hpcflow.sdk.core.object_list) ObjectListMultipleMatchError on_modified() (hpcflow.sdk.helper.watcher.MonitorController method) (hpcflow.sdk.helper.watcher.WorkflowMonitor method) open() (hpcflow.sdk.persistence.store_resource.JSONFileStoreResource method) (hpcflow.sdk.persistence.store_resource.StoreResource method) (hpcflow.sdk.persistence.store_resource.ZarrAttrsStoreResource method) open_file() (in module hpcflow.sdk.core.utils) open_text_resource() (in module hpcflow.sdk.core.utils) options (hpcflow.app.OutputFileParser attribute) (hpcflow.sdk.core.command_files.OutputFileParser attribute) os_args (hpcflow.sdk.submission.shells.base.Shell attribute) (hpcflow.sdk.submission.shells.bash.Bash attribute) (hpcflow.sdk.submission.shells.bash.WSLBash attribute) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell attribute) os_name (hpcflow.app.ElementResources attribute) (hpcflow.app.Jobscript property) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.types.ResourceSpecArgs attribute) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.types.JobScriptCreationArguments attribute) output (hpcflow.app.OutputFileParser attribute) OUTPUT (hpcflow.app.TaskSourceType attribute) output (hpcflow.sdk.core.command_files.OutputFileParser attribute) OUTPUT_FILE_PARSER (hpcflow.app.ActionScopeType attribute) output_file_parser() (hpcflow.app.ActionScope class method) (hpcflow.sdk.core.actions.ActionScope class method) output_file_parsers (hpcflow.app.Action attribute) (hpcflow.sdk.core.actions.Action attribute) output_files (hpcflow.app.Action attribute) (hpcflow.app.Element property) (hpcflow.app.ElementAction property) (hpcflow.app.ElementActionRun property) (hpcflow.app.ElementIteration property) (hpcflow.app.OutputFileParser attribute) (hpcflow.sdk.core.actions.Action attribute) (hpcflow.sdk.core.actions.ElementAction property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.command_files.OutputFileParser attribute) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property)

output_labels (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) (hpcflow.sdk.core.types.WorkflowTemplateTaskData attribute) output_tasks (hpcflow.sdk.core.types.IterableParam attribute) output_types (hpcflow.app.TaskSchema property) (hpcflow.sdk.core.task_schema.TaskSchema property) OutputFileParser (class in hpcflow.app) (class in hpcflow.sdk.core.command_files) OutputFileParserNoOutputError OutputFileParserSource (class in hpcflow.app) (class in hpcflow.sdk.core.command_files) OutputLabel (class in hpcflow.app) (class in hpcflow.sdk.core.task) outputs (hpcflow.app.Element property) (hpcflow.app.ElementAction property) (hpcflow.app.ElementActionRun property) (hpcflow.app.ElementIteration property) (hpcflow.app.OutputFileParser attribute) (hpcflow.app.TaskSchema attribute) (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.actions.ElementAction property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.command_files.OutputFileParser attribute) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.core.task.WorkflowTask property) (hpcflow.sdk.core.task_schema.TaskSchema attribute) outstanding_jobscripts (hpcflow.app.Submission property) (hpcflow.sdk.submission.submission.Submission property) overwrite_option() (in module hpcflow.sdk.cli_common)

P

P1_parameter_cls (class in hpcflow.sdk.core.test_utils) P1_sub_parameter_cls (class in hpcflow.sdk.core.test_utils) P1_sub_parameter_cls_2 (class in hpcflow.sdk.core.test_utils) package_name (hpcflow.sdk.app.App attribute) (hpcflow.sdk.app.BaseApp attribute) (hpcflow.sdk.runtime.RunTimeInfo attribute) parallel_environments (hpcflow.sdk.config.types.SchedulerConfigDescriptor attribute) parallel_mode (hpcflow.app.ElementResources attribute) (hpcflow.app.ExecutableInstance attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.environment.ExecutableInstance attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.types.ResourceSpecArgs attribute) parallel_modes (hpcflow.sdk.config.types.SLURMPartitionsDescriptor attribute) ParallelMode (class in hpcflow.sdk.core.enums) param_sources (hpcflow.sdk.persistence.types.PersistenceCache attribute) param_sources_cache (hpcflow.sdk.persistence.base.PersistentStore property) (hpcflow.sdk.persistence.json.JSONPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore property) Parameter (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) parameter (hpcflow.app.InputValue attribute) (hpcflow.app.OutputLabel attribute) (hpcflow.app.SchemaInput attribute) (hpcflow.app.SchemaOutput attribute) (hpcflow.app.SubParameter attribute) (hpcflow.app.ValueSequence property) (hpcflow.sdk.core.parameters.InputValue attribute) (hpcflow.sdk.core.parameters.SchemaInput attribute) (hpcflow.sdk.core.parameters.SchemaOutput attribute) (hpcflow.sdk.core.parameters.SubParameter attribute) (hpcflow.sdk.core.parameters.ValueSequence property) (hpcflow.sdk.core.task.OutputLabel attribute) (hpcflow.sdk.core.types.SchemaInputKwargs attribute) parameter_cache (hpcflow.sdk.persistence.base.PersistentStore property) (hpcflow.sdk.persistence.json.JSONPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore property) parameter_class_modules (hpcflow.app.TaskSchema attribute) (hpcflow.sdk.core.task_schema.TaskSchema attribute) parameter_sources (hpcflow.sdk.config.config.Config property) (hpcflow.sdk.config.types.ConfigDescriptor attribute) ParameterDependence (class in hpcflow.sdk.core.types) ParameterPath (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) ParameterPropagationMode (class in hpcflow.app) Parameters (class in hpcflow.app) (class in hpcflow.sdk.core.task) parameters (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) (hpcflow.sdk.persistence.types.PersistenceCache attribute) (hpcflow.sdk.typing.TemplateComponents attribute) ParametersList (class in hpcflow.app) (class in hpcflow.sdk.core.object_list) ParameterSpecValidationError ParameterTypes (in module hpcflow.sdk.persistence.types) ParameterValue (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) ParamSource (class in hpcflow.sdk.typing) parent (hpcflow.app.ElementParameter attribute) (hpcflow.sdk.core.element.ElementParameter attribute) parent_ref (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) ParentPath (class in hpcflow.sdk.core.types) parents (hpcflow.app.WorkflowLoop property) (hpcflow.sdk.core.loop.WorkflowLoop property) (hpcflow.sdk.persistence.types.LoopDescriptor attribute) parse_jobscript_wait_spec() (in module hpcflow.sdk.cli) parse_submission_output() (hpcflow.app.DirectPosix method) (hpcflow.app.DirectWindows method) (hpcflow.app.QueuedScheduler method) (hpcflow.app.SGEPosix method) (hpcflow.app.SlurmPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectScheduler method) (hpcflow.sdk.submission.schedulers.direct.DirectWindows method) (hpcflow.sdk.submission.schedulers.QueuedScheduler method) (hpcflow.sdk.submission.schedulers.Scheduler method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix method) parse_timestamp() (in module hpcflow.sdk.core.utils) parse_watch_workflows_file() (hpcflow.sdk.helper.watcher.MonitorController static method) parser (hpcflow.app.OutputFileParserSource attribute) (hpcflow.sdk.core.command_files.OutputFileParserSource attribute) PARTIALLY_SUBMITTED (hpcflow.sdk.submission.enums.SubmissionStatus attribute) partitions (hpcflow.sdk.config.types.SchedulerConfigDescriptor attribute) PATH hpcflow-internal-workflow command line option path (hpcflow.app.ElementParameter attribute) (hpcflow.app.InputFile property) (hpcflow.app.InputFileGeneratorSource property) (hpcflow.app.InputSource attribute) (hpcflow.app.InputValue attribute) (hpcflow.app.OutputFileParserSource property) (hpcflow.app.ParameterPath attribute) (hpcflow.app.Parameters attribute) (hpcflow.app.Rule attribute) (hpcflow.app.Submission property) (hpcflow.app.ValuePerturbation attribute) (hpcflow.app.ValueSequence attribute) (hpcflow.sdk.config.config_file.ConfigFile property) (hpcflow.sdk.core.command_files.InputFile property) (hpcflow.sdk.core.command_files.InputFileGeneratorSource property) (hpcflow.sdk.core.command_files.OutputFileParserSource property) (hpcflow.sdk.core.element.ElementParameter attribute) (hpcflow.sdk.core.parameters.InputSource attribute) (hpcflow.sdk.core.parameters.InputValue attribute) (hpcflow.sdk.core.parameters.ParameterPath attribute) (hpcflow.sdk.core.parameters.ValuePerturbation attribute) (hpcflow.sdk.core.parameters.ValueSequence attribute) (hpcflow.sdk.core.rule.Rule attribute) (hpcflow.sdk.core.task.Parameters attribute) (hpcflow.sdk.core.types.MultiplicityDescriptor attribute) (hpcflow.sdk.core.types.RuleArgs attribute) (hpcflow.sdk.core.validation.Rule property) (hpcflow.sdk.persistence.types.File attribute) (hpcflow.sdk.persistence.types.FileDescriptor attribute) (hpcflow.sdk.submission.submission.Submission property) (hpcflow.sdk.typing.KnownSubmission attribute) path() (hpcflow.sdk.core.utils.JSONLikeDirSnapShot method) path_option() (in module hpcflow.sdk.cli_common) path_split (hpcflow.app.ValueSequence property) (hpcflow.sdk.core.parameters.ValueSequence property) path_type (hpcflow.app.ValueSequence property) (hpcflow.sdk.core.parameters.ValueSequence property) PathLike (in module hpcflow.sdk.typing) paths (hpcflow.sdk.core.utils.JSONLikeDirSnapShot property) Pending (class in hpcflow.sdk.core.types) pending (hpcflow.sdk.core.enums.EARStatus attribute) (hpcflow.sdk.submission.enums.JobscriptElementState attribute) PENDING (hpcflow.sdk.submission.enums.SubmissionStatus attribute) PendingChanges (class in hpcflow.sdk.persistence.pending) perm_error_retry() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) persistence_logger (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) PersistenceCache (class in hpcflow.sdk.persistence.types) PersistentStore (class in hpcflow.sdk.persistence.base) PersistentStoreFeatures (class in hpcflow.sdk.persistence.base) pop() (hpcflow.sdk.config.config.Config method) (hpcflow.sdk.config.types.ConfigDescriptor method) (hpcflow.sdk.config.types.ConfigMetadata method) (hpcflow.sdk.config.types.DefaultConfiguration method) (hpcflow.sdk.config.types.InvocationDescriptor method) (hpcflow.sdk.config.types.SchedulerConfigDescriptor method) (hpcflow.sdk.config.types.SGEParallelEnvsDescriptor method) (hpcflow.sdk.config.types.ShellConfigDescriptor method) (hpcflow.sdk.config.types.SLURMPartitionsDescriptor method) (hpcflow.sdk.core.loop_cache.LoopIndex method) (hpcflow.sdk.core.types.ActParameterDependence method) (hpcflow.sdk.core.types.CreationInfo method) (hpcflow.sdk.core.types.DependentDescriptor method) (hpcflow.sdk.core.types.ElementDescriptor method) (hpcflow.sdk.core.types.IterableParam method) (hpcflow.sdk.core.types.JobscriptSubmissionFailureArgs method) (hpcflow.sdk.core.types.LabelInfo method) (hpcflow.sdk.core.types.LabellingDescriptor method) (hpcflow.sdk.core.types.MultiplicityDescriptor method) (hpcflow.sdk.core.types.ParameterDependence method) (hpcflow.sdk.core.types.ParentPath method) (hpcflow.sdk.core.types.Pending method) (hpcflow.sdk.core.types.RelevantData method) (hpcflow.sdk.core.types.RepeatsDescriptor method) (hpcflow.sdk.core.types.ResourceSpecArgs method) (hpcflow.sdk.core.types.RuleArgs method) (hpcflow.sdk.core.types.SchemaInputKwargs method) (hpcflow.sdk.core.types.ScriptData method) (hpcflow.sdk.core.types.SiblingPath method) (hpcflow.sdk.core.types.UpdatePath method) (hpcflow.sdk.core.types.WorkflowTemplateTaskData method) (hpcflow.sdk.persistence.types.ElemMeta method) (hpcflow.sdk.persistence.types.EncodedStoreParameter method) (hpcflow.sdk.persistence.types.File method) (hpcflow.sdk.persistence.types.FileDescriptor method) (hpcflow.sdk.persistence.types.IterMeta method) (hpcflow.sdk.persistence.types.LoopDescriptor method) (hpcflow.sdk.persistence.types.Metadata method) (hpcflow.sdk.persistence.types.PersistenceCache method) (hpcflow.sdk.persistence.types.RunMeta method) (hpcflow.sdk.persistence.types.StoreCreationInfo method) (hpcflow.sdk.persistence.types.TaskMeta method) (hpcflow.sdk.persistence.types.TemplateMeta method) (hpcflow.sdk.persistence.types.TypeLookup method) (hpcflow.sdk.persistence.types.ZarrAttrsDict method) (hpcflow.sdk.submission.types.JobScriptCreationArguments method) (hpcflow.sdk.submission.types.JobScriptDescriptor method) (hpcflow.sdk.submission.types.JobscriptHeaderArgs method) (hpcflow.sdk.submission.types.ResolvedDependencies method) (hpcflow.sdk.submission.types.SchedulerRef method) (hpcflow.sdk.submission.types.SubmissionPart method) (hpcflow.sdk.typing.KnownSubmission method) (hpcflow.sdk.typing.KnownSubmissionItem method) (hpcflow.sdk.typing.ParamSource method) (hpcflow.sdk.typing.TemplateComponents method)

popitem() (hpcflow.sdk.config.types.ConfigDescriptor method) (hpcflow.sdk.config.types.ConfigMetadata method) (hpcflow.sdk.config.types.DefaultConfiguration method) (hpcflow.sdk.config.types.InvocationDescriptor method) (hpcflow.sdk.config.types.SchedulerConfigDescriptor method) (hpcflow.sdk.config.types.SGEParallelEnvsDescriptor method) (hpcflow.sdk.config.types.ShellConfigDescriptor method) (hpcflow.sdk.config.types.SLURMPartitionsDescriptor method) (hpcflow.sdk.core.loop_cache.LoopIndex method) (hpcflow.sdk.core.types.ActParameterDependence method) (hpcflow.sdk.core.types.CreationInfo method) (hpcflow.sdk.core.types.DependentDescriptor method) (hpcflow.sdk.core.types.ElementDescriptor method) (hpcflow.sdk.core.types.IterableParam method) (hpcflow.sdk.core.types.JobscriptSubmissionFailureArgs method) (hpcflow.sdk.core.types.LabelInfo method) (hpcflow.sdk.core.types.LabellingDescriptor method) (hpcflow.sdk.core.types.MultiplicityDescriptor method) (hpcflow.sdk.core.types.ParameterDependence method) (hpcflow.sdk.core.types.ParentPath method) (hpcflow.sdk.core.types.Pending method) (hpcflow.sdk.core.types.RelevantData method) (hpcflow.sdk.core.types.RepeatsDescriptor method) (hpcflow.sdk.core.types.ResourceSpecArgs method) (hpcflow.sdk.core.types.RuleArgs method) (hpcflow.sdk.core.types.SchemaInputKwargs method) (hpcflow.sdk.core.types.ScriptData method) (hpcflow.sdk.core.types.SiblingPath method) (hpcflow.sdk.core.types.UpdatePath method) (hpcflow.sdk.core.types.WorkflowTemplateTaskData method) (hpcflow.sdk.persistence.types.ElemMeta method) (hpcflow.sdk.persistence.types.EncodedStoreParameter method) (hpcflow.sdk.persistence.types.File method) (hpcflow.sdk.persistence.types.FileDescriptor method) (hpcflow.sdk.persistence.types.IterMeta method) (hpcflow.sdk.persistence.types.LoopDescriptor method) (hpcflow.sdk.persistence.types.Metadata method) (hpcflow.sdk.persistence.types.PersistenceCache method) (hpcflow.sdk.persistence.types.RunMeta method) (hpcflow.sdk.persistence.types.StoreCreationInfo method) (hpcflow.sdk.persistence.types.TaskMeta method) (hpcflow.sdk.persistence.types.TemplateMeta method) (hpcflow.sdk.persistence.types.TypeLookup method) (hpcflow.sdk.persistence.types.ZarrAttrsDict method) (hpcflow.sdk.submission.types.JobScriptCreationArguments method) (hpcflow.sdk.submission.types.JobScriptDescriptor method) (hpcflow.sdk.submission.types.JobscriptHeaderArgs method) (hpcflow.sdk.submission.types.ResolvedDependencies method) (hpcflow.sdk.submission.types.SchedulerRef method) (hpcflow.sdk.submission.types.SubmissionPart method) (hpcflow.sdk.typing.KnownSubmission method) (hpcflow.sdk.typing.KnownSubmissionItem method) (hpcflow.sdk.typing.ParamSource method) (hpcflow.sdk.typing.TemplateComponents method) prefixed_names_unlabelled (hpcflow.app.ElementInputFiles property) (hpcflow.app.ElementInputs property) (hpcflow.app.ElementOutputFiles property) (hpcflow.app.ElementOutputs property) (hpcflow.sdk.core.element.ElementInputFiles property) (hpcflow.sdk.core.element.ElementInputs property) (hpcflow.sdk.core.element.ElementOutputFiles property) (hpcflow.sdk.core.element.ElementOutputs property) prefixed_names_unlabelled_str (hpcflow.app.ElementInputFiles property) (hpcflow.app.ElementInputs property) (hpcflow.app.ElementOutputFiles property) (hpcflow.app.ElementOutputs property) (hpcflow.sdk.core.element.ElementInputFiles property) (hpcflow.sdk.core.element.ElementInputs property) (hpcflow.sdk.core.element.ElementOutputFiles property) (hpcflow.sdk.core.element.ElementOutputs property) prepare_element_resolution() (hpcflow.app.Task method) (hpcflow.sdk.core.task.Task method) prepare_element_run_dirs() (hpcflow.sdk.submission.shells.base.Shell method) (hpcflow.sdk.submission.shells.bash.Bash method) (hpcflow.sdk.submission.shells.bash.WSLBash method) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell method) prepare_JS_path() (hpcflow.sdk.submission.shells.base.Shell method) (hpcflow.sdk.submission.shells.bash.Bash method) (hpcflow.sdk.submission.shells.bash.WSLBash method) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell method) prepare_JSON_dump() (hpcflow.app.ParameterValue method) (hpcflow.sdk.core.parameters.ParameterValue method) (hpcflow.sdk.core.test_utils.P1_parameter_cls method) (hpcflow.sdk.core.test_utils.P1_sub_parameter_cls method) (hpcflow.sdk.core.test_utils.P1_sub_parameter_cls_2 method) prepare_persistent_copy() (hpcflow.app.ElementSet method) (hpcflow.sdk.core.task.ElementSet method) prepare_test_store_from_spec() (hpcflow.sdk.persistence.base.PersistentStore static method) (hpcflow.sdk.persistence.json.JSONPersistentStore static method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore static method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore static method) prepared (hpcflow.sdk.core.enums.EARStatus attribute) PreparedConditionCallable (class in hpcflow.sdk.core.validation) prepend() (hpcflow.sdk.config.config.Config method) PrettyPrinter (class in hpcflow.sdk.core.utils) PRIMITIVES (in module hpcflow.sdk.core.json_like) (in module hpcflow.sdk.core.zarr_io) print_idx_opt() (in module hpcflow.sdk.cli_common) process_app_invoc_executable() (hpcflow.sdk.submission.shells.base.Shell static method) (hpcflow.sdk.submission.shells.bash.Bash static method) (hpcflow.sdk.submission.shells.bash.WSLBash static method) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell static method) process_ID (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.types.JobScriptCreationArguments attribute) process_JS_header_args() (hpcflow.sdk.submission.shells.base.Shell method) (hpcflow.sdk.submission.shells.bash.Bash method) (hpcflow.sdk.submission.shells.bash.WSLBash method) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell method) process_resources() (hpcflow.app.DirectPosix class method) (hpcflow.app.DirectWindows class method) (hpcflow.app.QueuedScheduler method) (hpcflow.app.SGEPosix class method) (hpcflow.app.SlurmPosix class method) (hpcflow.sdk.submission.schedulers.direct.DirectPosix class method) (hpcflow.sdk.submission.schedulers.direct.DirectScheduler class method) (hpcflow.sdk.submission.schedulers.direct.DirectWindows class method) (hpcflow.sdk.submission.schedulers.QueuedScheduler method) (hpcflow.sdk.submission.schedulers.Scheduler method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix class method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix class method) process_script_data_formats() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) process_shell_parameter_output() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) process_std_stream() (hpcflow.app.Command method) (hpcflow.sdk.core.commands.Command method) process_string_nodes() (in module hpcflow.sdk.core.utils) PROCESSING (hpcflow.app.ActionScopeType attribute) processing() (hpcflow.app.ActionScope class method) (hpcflow.sdk.core.actions.ActionScope class method) propagation_mode (hpcflow.app.SchemaOutput attribute) (hpcflow.sdk.core.parameters.SchemaOutput attribute) (hpcflow.sdk.core.types.LabelInfo attribute) (hpcflow.sdk.core.types.LabellingDescriptor attribute) provides_parameters (hpcflow.app.TaskSchema property) (hpcflow.sdk.core.task_schema.TaskSchema property) provides_parameters() (hpcflow.app.Task method) (hpcflow.sdk.core.task.Task method) PY_TEST_ARGS hpcflow-test command line option pytest_args (hpcflow.sdk.app.App attribute) (hpcflow.sdk.app.BaseApp attribute) python_executable_path (hpcflow.sdk.runtime.RunTimeInfo attribute) python_version (hpcflow.sdk.runtime.RunTimeInfo attribute)

Q

QueuedScheduler (class in hpcflow.app) (class in hpcflow.sdk.submission.schedulers)

R

raise_on_missing (hpcflow.app.Parameters attribute) (hpcflow.sdk.core.task.Parameters attribute) raise_on_unset (hpcflow.app.Parameters attribute) (hpcflow.sdk.core.task.Parameters attribute) rate_limit_safe_url_to_fs() (in module hpcflow.sdk.app) read_contents() (hpcflow.app.InputFile method) (hpcflow.app.InputFileGeneratorSource method) (hpcflow.app.OutputFileParserSource method) (hpcflow.sdk.core.command_files.InputFile method) (hpcflow.sdk.core.command_files.InputFileGeneratorSource method) (hpcflow.sdk.core.command_files.OutputFileParserSource method) read_JSON_file() (in module hpcflow.sdk.core.utils) read_JSON_string() (in module hpcflow.sdk.core.utils) read_known_submissions_file() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) read_YAML_file() (in module hpcflow.sdk.core.utils) read_YAML_str() (in module hpcflow.sdk.core.utils) rechunk() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) rechunk_backup_opt() (in module hpcflow.sdk.cli_common) rechunk_chunk_size_opt() (in module hpcflow.sdk.cli_common) rechunk_parameter_base() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) rechunk_runs() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) rechunk_status_opt() (in module hpcflow.sdk.cli_common) register_config_get_callback() (hpcflow.sdk.config.config.Config method) register_config_set_callback() (hpcflow.sdk.config.config.Config method) reinstate_replaced_dir() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) relative_path (hpcflow.sdk.core.types.ParentPath attribute) RelevantData (class in hpcflow.sdk.core.types) RelevantPath (in module hpcflow.sdk.core.types) reload() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) reload_config() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) reload_template_components() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) remap() (in module hpcflow.sdk.core.utils) remove_ansi_escape_sequences() (in module hpcflow.sdk.core.utils) remove_file_handlers() (hpcflow.sdk.log.AppLog method) remove_path() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) remove_replaced_dir() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) rename() (hpcflow.sdk.core.types.AbstractFileSystem method) rename_config_key() (hpcflow.sdk.config.config_file.ConfigFile method) rename_path() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) repeats (hpcflow.app.ElementSet attribute) (hpcflow.sdk.core.task.ElementSet attribute) RepeatsDescriptor (class in hpcflow.sdk.core.types) replace_items() (in module hpcflow.sdk.core.utils) replaced_workflow (hpcflow.sdk.persistence.types.Metadata attribute) (hpcflow.sdk.persistence.types.ZarrAttrsDict attribute) reset() (hpcflow.sdk.config.config.Config method) (hpcflow.sdk.persistence.pending.PendingChanges method) reset_config() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) reshape() (in module hpcflow.sdk.core.utils) resolve_element_data_indices() (hpcflow.app.WorkflowTask static method) (hpcflow.sdk.core.task.WorkflowTask static method) resolve_fsspec() (in module hpcflow.sdk.core.workflow) resolve_jobscript_dependencies() (in module hpcflow.sdk.submission.jobscript) resolve_jobscripts() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method)

resolved_executable_name (hpcflow.sdk.runtime.RunTimeInfo property) resolved_executable_path (hpcflow.sdk.runtime.RunTimeInfo property) resolved_script_path (hpcflow.sdk.runtime.RunTimeInfo property) ResolvedDependencies (class in hpcflow.sdk.submission.types) resource_hash (hpcflow.sdk.submission.types.JobScriptCreationArguments attribute) (hpcflow.sdk.submission.types.JobScriptDescriptor attribute) resource_scope (hpcflow.app.ValueSequence property) (hpcflow.sdk.core.parameters.ValueSequence property) ResourceList (class in hpcflow.app) (class in hpcflow.sdk.core.object_list) ResourcePersistingWorkflow (class in hpcflow.sdk.core.types) resources (hpcflow.app.ElementActionRun property) (hpcflow.app.ElementSet attribute) (hpcflow.app.Jobscript property) (hpcflow.app.WorkflowTemplate attribute) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.task.ElementSet attribute) (hpcflow.sdk.core.workflow.WorkflowTemplate attribute) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.types.JobScriptCreationArguments attribute) (hpcflow.sdk.submission.types.JobScriptDescriptor attribute) Resources (in module hpcflow.sdk.core.types) ResourceSpec (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) ResourceSpecArgs (class in hpcflow.sdk.core.types) ResourceValidationError restart_helper() (in module hpcflow.sdk.helper.helper) return_element_parameters (hpcflow.app.Parameters attribute) (hpcflow.sdk.core.task.Parameters attribute) rich_repr (hpcflow.sdk.core.enums.EARStatus property) (hpcflow.sdk.submission.enums.JobscriptElementState property) rm() (hpcflow.sdk.core.types.AbstractFileSystem method) root_path (hpcflow.sdk.core.utils.JSONLikeDirSnapShot attribute) Rule (class in hpcflow.app) (class in hpcflow.sdk.core.rule) (class in hpcflow.sdk.core.validation) rule (hpcflow.app.ActionRule attribute) (hpcflow.sdk.core.actions.ActionRule attribute) RuleArgs (class in hpcflow.sdk.core.types) rules (hpcflow.app.Action attribute) (hpcflow.app.Command attribute) (hpcflow.app.ElementFilter attribute) (hpcflow.app.InputFileGenerator attribute) (hpcflow.app.OutputFileParser attribute) (hpcflow.sdk.core.actions.Action attribute) (hpcflow.sdk.core.command_files.InputFileGenerator attribute) (hpcflow.sdk.core.command_files.OutputFileParser attribute) (hpcflow.sdk.core.commands.Command attribute) (hpcflow.sdk.core.element.ElementFilter attribute) (hpcflow.sdk.core.validation.Schema property) run_cmd() (in module hpcflow.sdk.submission.schedulers.utils) run_dependencies (hpcflow.sdk.core.cache.DependencyCache attribute) run_dependents (hpcflow.sdk.core.cache.DependencyCache attribute) run_helper() (in module hpcflow.sdk.helper.helper) run_hostname (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.json.JsonStoreEAR attribute) (hpcflow.sdk.persistence.types.RunMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) run_hpcflow_tests (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) run_hpcflow_tests() (in module hpcflow.app) run_idx (hpcflow.sdk.typing.ParamSource attribute) run_log_file (hpcflow.sdk.submission.types.JobscriptHeaderArgs attribute) run_tests (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) run_tests() (in module hpcflow.app) run_time_info (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) RunDirAppFiles (class in hpcflow.app) (class in hpcflow.sdk.core.run_dir_files) RunMeta (class in hpcflow.sdk.persistence.types) running (hpcflow.sdk.core.enums.EARStatus attribute) (hpcflow.sdk.submission.enums.JobscriptElementState attribute) (hpcflow.sdk.submission.types.JobScriptCreationArguments attribute) RunNotAbortableError runs (hpcflow.app.ElementAction property) (hpcflow.sdk.core.actions.ElementAction property) (hpcflow.sdk.persistence.types.Metadata attribute) runtime_info_logger (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) RunTimeInfo (class in hpcflow.sdk.runtime)

S

save() (hpcflow.sdk.config.config.Config method) (hpcflow.sdk.config.config_file.ConfigFile method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) save_files (hpcflow.app.Action attribute) (hpcflow.app.OutputFileParser attribute) (hpcflow.sdk.core.actions.Action attribute) (hpcflow.sdk.core.command_files.OutputFileParser attribute) save_from_HDF5_group() (hpcflow.app.ParameterValue class method) (hpcflow.sdk.core.parameters.ParameterValue class method) (hpcflow.sdk.core.test_utils.P1_parameter_cls class method) (hpcflow.sdk.core.test_utils.P1_sub_parameter_cls class method) (hpcflow.sdk.core.test_utils.P1_sub_parameter_cls_2 class method) save_from_JSON() (hpcflow.app.ParameterValue class method) (hpcflow.sdk.core.parameters.ParameterValue class method) (hpcflow.sdk.core.test_utils.P1_parameter_cls class method) (hpcflow.sdk.core.test_utils.P1_sub_parameter_cls class method) (hpcflow.sdk.core.test_utils.P1_sub_parameter_cls_2 class method) save_parameter() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) Scheduler (class in hpcflow.sdk.submission.schedulers) scheduler (hpcflow.app.ElementResources attribute) (hpcflow.app.Jobscript property) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.types.ResourceSpecArgs attribute) (hpcflow.sdk.submission.jobscript.Jobscript property) scheduler_args (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.types.ResourceSpecArgs attribute) scheduler_job_ID (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.types.JobScriptCreationArguments attribute) scheduler_js_ref (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) scheduler_lookup (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) SCHEDULER_NAME hpcflow-submission-scheduler command line option scheduler_name (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.types.JobScriptCreationArguments attribute) scheduler_ref (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) SchedulerConfigDescriptor (class in hpcflow.sdk.config.types) SchedulerRef (class in hpcflow.sdk.submission.types) schedulers (hpcflow.sdk.config.config.Config property) (hpcflow.sdk.config.types.ConfigDescriptor attribute) (hpcflow.sdk.persistence.base.PersistentStoreFeatures attribute) SchedulerVersionsFailure Schema (class in hpcflow.sdk.core.validation) schema (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) (hpcflow.sdk.core.types.WorkflowTemplateTaskData attribute) schema_parameters (hpcflow.app.Element property) (hpcflow.app.ElementIteration property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.persistence.base.StoreElementIter attribute) (hpcflow.sdk.persistence.json.JsonStoreElementIter attribute) (hpcflow.sdk.persistence.types.IterMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter attribute) SchemaInput (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) SchemaInputKwargs (class in hpcflow.sdk.core.types) SchemaOutput (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) SchemaParameter (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) schemas (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) scope (hpcflow.app.ActionEnvironment attribute) (hpcflow.app.ResourceSpec attribute) (hpcflow.sdk.core.actions.ActionEnvironment attribute) (hpcflow.sdk.core.parameters.ResourceSpec attribute) (hpcflow.sdk.core.types.ResourceSpecArgs attribute) scratch (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.types.ResourceSpecArgs attribute) script (hpcflow.app.Action attribute) (hpcflow.app.InputFileGenerator attribute) (hpcflow.app.OutputFileParser attribute) (hpcflow.sdk.core.actions.Action attribute) (hpcflow.sdk.core.command_files.InputFileGenerator attribute) (hpcflow.sdk.core.command_files.OutputFileParser attribute) script_data_files_use_opt (hpcflow.app.Action attribute) (hpcflow.sdk.core.actions.Action attribute) script_data_in (hpcflow.app.Action attribute) (hpcflow.sdk.core.actions.Action attribute) script_data_in_grouped (hpcflow.app.Action property) (hpcflow.sdk.core.actions.Action property) script_data_in_has_direct (hpcflow.app.Action property) (hpcflow.sdk.core.actions.Action property) script_data_in_has_files (hpcflow.app.Action property) (hpcflow.sdk.core.actions.Action property) script_data_out (hpcflow.app.Action attribute) (hpcflow.sdk.core.actions.Action attribute) script_data_out_grouped (hpcflow.app.Action property) (hpcflow.sdk.core.actions.Action property) script_data_out_has_direct (hpcflow.app.Action property) (hpcflow.sdk.core.actions.Action property) script_data_out_has_files (hpcflow.app.Action property) (hpcflow.sdk.core.actions.Action property) script_exe (hpcflow.app.Action attribute) (hpcflow.sdk.core.actions.Action attribute) script_is_python (hpcflow.app.Action property) (hpcflow.sdk.core.actions.Action property) script_pass_env_spec (hpcflow.app.Action attribute) (hpcflow.app.InputFileGenerator attribute) (hpcflow.app.OutputFileParser attribute) (hpcflow.sdk.core.actions.Action attribute) (hpcflow.sdk.core.command_files.InputFileGenerator attribute) (hpcflow.sdk.core.command_files.OutputFileParser attribute) script_path (hpcflow.sdk.runtime.RunTimeInfo property) ScriptData (class in hpcflow.sdk.core.types) scripts (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) (hpcflow.sdk.typing.TemplateComponents attribute) scripts_dir (hpcflow.sdk.app.App attribute) (hpcflow.sdk.app.BaseApp attribute) sdk_classes (in module hpcflow.sdk) sdk_funcs (in module hpcflow.sdk) search_dir_files_by_regex() (in module hpcflow.sdk.core.utils) select_invocation() (hpcflow.sdk.config.config_file.ConfigFile static method) seq_idx (hpcflow.sdk.persistence.base.StoreElement attribute) (hpcflow.sdk.persistence.json.JsonStoreElement attribute) (hpcflow.sdk.persistence.types.ElemMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElement attribute) sequence_idx (hpcflow.app.Element property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.typing.ParamSource attribute) sequences (hpcflow.app.ElementSet attribute) (hpcflow.sdk.core.task.ElementSet attribute) SerFormT (in module hpcflow.sdk.persistence.base) set() (hpcflow.sdk.config.config.Config method) set_callback_file_paths() (in module hpcflow.sdk.config.callbacks) set_data() (hpcflow.sdk.persistence.base.StoreParameter method) (hpcflow.sdk.persistence.zarr.ZarrStoreParameter method) set_defaults() (hpcflow.app.ElementResources method) (hpcflow.sdk.core.element.ElementResources method) set_EAR_end() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) set_EAR_ends (hpcflow.sdk.persistence.pending.PendingChanges attribute) set_EAR_skip() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) set_EAR_skips (hpcflow.sdk.persistence.pending.PendingChanges attribute) set_EAR_start() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) set_EAR_starts (hpcflow.sdk.persistence.pending.PendingChanges attribute) set_EAR_submission_index() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) set_EAR_submission_indices (hpcflow.sdk.persistence.pending.PendingChanges attribute) set_EARs_initialised (hpcflow.sdk.persistence.pending.PendingChanges attribute) set_EARs_initialised() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.base.StoreElementIter method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.json.JsonStoreElementIter method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) set_file() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.base.StoreParameter method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrStoreParameter method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) set_github_demo_data_dir() (hpcflow.sdk.config.config.Config method) set_in_container() (in module hpcflow.sdk.core.utils) set_jobscript_metadata() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) set_js_metadata (hpcflow.sdk.persistence.pending.PendingChanges attribute) set_parameter_value() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) set_parameters (hpcflow.sdk.persistence.pending.PendingChanges attribute) set_scheduler_invocation_match() (in module hpcflow.sdk.config.callbacks) set_sequence_parameters() (hpcflow.app.Task method) (hpcflow.sdk.core.task.Task method) setdefault() (hpcflow.sdk.config.types.ConfigDescriptor method) (hpcflow.sdk.config.types.ConfigMetadata method) (hpcflow.sdk.config.types.DefaultConfiguration method) (hpcflow.sdk.config.types.InvocationDescriptor method) (hpcflow.sdk.config.types.SchedulerConfigDescriptor method) (hpcflow.sdk.config.types.SGEParallelEnvsDescriptor method) (hpcflow.sdk.config.types.ShellConfigDescriptor method) (hpcflow.sdk.config.types.SLURMPartitionsDescriptor method) (hpcflow.sdk.core.loop_cache.LoopIndex method) (hpcflow.sdk.core.types.ActParameterDependence method) (hpcflow.sdk.core.types.CreationInfo method) (hpcflow.sdk.core.types.DependentDescriptor method) (hpcflow.sdk.core.types.ElementDescriptor method) (hpcflow.sdk.core.types.IterableParam method) (hpcflow.sdk.core.types.JobscriptSubmissionFailureArgs method) (hpcflow.sdk.core.types.LabelInfo method) (hpcflow.sdk.core.types.LabellingDescriptor method) (hpcflow.sdk.core.types.MultiplicityDescriptor method) (hpcflow.sdk.core.types.ParameterDependence method) (hpcflow.sdk.core.types.ParentPath method) (hpcflow.sdk.core.types.Pending method) (hpcflow.sdk.core.types.RelevantData method) (hpcflow.sdk.core.types.RepeatsDescriptor method) (hpcflow.sdk.core.types.ResourceSpecArgs method) (hpcflow.sdk.core.types.RuleArgs method) (hpcflow.sdk.core.types.SchemaInputKwargs method) (hpcflow.sdk.core.types.ScriptData method) (hpcflow.sdk.core.types.SiblingPath method) (hpcflow.sdk.core.types.UpdatePath method) (hpcflow.sdk.core.types.WorkflowTemplateTaskData method) (hpcflow.sdk.persistence.types.ElemMeta method) (hpcflow.sdk.persistence.types.EncodedStoreParameter method) (hpcflow.sdk.persistence.types.File method) (hpcflow.sdk.persistence.types.FileDescriptor method) (hpcflow.sdk.persistence.types.IterMeta method) (hpcflow.sdk.persistence.types.LoopDescriptor method) (hpcflow.sdk.persistence.types.Metadata method) (hpcflow.sdk.persistence.types.PersistenceCache method) (hpcflow.sdk.persistence.types.RunMeta method) (hpcflow.sdk.persistence.types.StoreCreationInfo method) (hpcflow.sdk.persistence.types.TaskMeta method) (hpcflow.sdk.persistence.types.TemplateMeta method) (hpcflow.sdk.persistence.types.TypeLookup method) (hpcflow.sdk.persistence.types.ZarrAttrsDict method) (hpcflow.sdk.submission.types.JobScriptCreationArguments method) (hpcflow.sdk.submission.types.JobScriptDescriptor method) (hpcflow.sdk.submission.types.JobscriptHeaderArgs method) (hpcflow.sdk.submission.types.ResolvedDependencies method) (hpcflow.sdk.submission.types.SchedulerRef method) (hpcflow.sdk.submission.types.SubmissionPart method) (hpcflow.sdk.typing.KnownSubmission method) (hpcflow.sdk.typing.KnownSubmissionItem method) (hpcflow.sdk.typing.ParamSource method) (hpcflow.sdk.typing.TemplateComponents method) sets (hpcflow.sdk.persistence.types.TypeLookup attribute) SetterCallback (in module hpcflow.sdk.config.types) setup (hpcflow.app.Environment attribute) (hpcflow.sdk.core.environment.Environment attribute) SGE_parallel_env (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.types.ResourceSpecArgs attribute) SGEParallelEnvsDescriptor (class in hpcflow.sdk.config.types) SGEPosix (class in hpcflow.app) (class in hpcflow.sdk.submission.schedulers.sge)

SHA hpcflow-config-set-github-demo-data-dir command line option SHARED (hpcflow.sdk.core.enums.ParallelMode attribute) shared_data_name (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) shared_data_primary_key (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) shebang_executable (hpcflow.sdk.submission.shells.base.Shell property) (hpcflow.sdk.submission.shells.bash.Bash property) (hpcflow.sdk.submission.shells.bash.WSLBash property) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell property) Shell (class in hpcflow.sdk.submission.shells.base) shell (hpcflow.app.ElementResources attribute) (hpcflow.app.Jobscript property) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.types.ResourceSpecArgs attribute) (hpcflow.sdk.submission.jobscript.Jobscript property) shell_args (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.types.ResourceSpecArgs attribute) SHELL_NAME hpcflow-submission-shell-info command line option shell_name (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.types.JobScriptCreationArguments attribute) ShellConfigDescriptor (class in hpcflow.sdk.config.types) shells (hpcflow.sdk.config.config.Config property) (hpcflow.sdk.config.types.ConfigDescriptor attribute) show (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) show() (hpcflow.sdk.runtime.RunTimeInfo method) (in module hpcflow.app) show_all_EAR_statuses() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) show_demo_workflow() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) show_legend (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) show_legend() (in module hpcflow.app) SiblingPath (class in hpcflow.sdk.core.types) single_label (hpcflow.app.SchemaInput property) (hpcflow.sdk.core.parameters.SchemaInput property) single_labelled_data (hpcflow.app.SchemaInput property) (hpcflow.sdk.core.parameters.SchemaInput property) single_labelled_type (hpcflow.app.SchemaInput property) (hpcflow.sdk.core.parameters.SchemaInput property) Singleton (class in hpcflow.sdk.app) size() (hpcflow.sdk.core.utils.JSONLikeDirSnapShot method) skip (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.json.JsonStoreEAR attribute) (hpcflow.sdk.persistence.types.RunMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) skipped (hpcflow.sdk.core.enums.EARStatus attribute) SLURM_is_parallel (hpcflow.app.ElementResources property) (hpcflow.sdk.core.element.ElementResources property) SLURM_num_cpus_per_task (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.types.ResourceSpecArgs attribute) SLURM_num_nodes (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.types.ResourceSpecArgs attribute) SLURM_num_tasks (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.types.ResourceSpecArgs attribute) SLURM_num_tasks_per_node (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.types.ResourceSpecArgs attribute) SLURM_partition (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.types.ResourceSpecArgs attribute) SLURMPartitionsDescriptor (class in hpcflow.sdk.config.types) SlurmPosix (class in hpcflow.app) (class in hpcflow.sdk.submission.schedulers.slurm) snapshot_end (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.json.JsonStoreEAR attribute) (hpcflow.sdk.persistence.types.RunMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) snapshot_start (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.json.JsonStoreEAR attribute) (hpcflow.sdk.persistence.types.RunMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) source (hpcflow.sdk.persistence.base.StoreParameter attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreParameter attribute) source_file (hpcflow.app.WorkflowTemplate attribute) (hpcflow.sdk.core.workflow.WorkflowTemplate attribute) source_type (hpcflow.app.InputSource attribute) (hpcflow.sdk.core.parameters.InputSource attribute) sourceable_elem_iters (hpcflow.app.ElementSet attribute) (hpcflow.sdk.core.task.ElementSet attribute) specifiers (hpcflow.app.Environment attribute) (hpcflow.sdk.core.environment.Environment attribute) split_param_label() (in module hpcflow.sdk.core.utils) src_idx (hpcflow.sdk.persistence.base.StoreElement attribute) (hpcflow.sdk.persistence.json.JsonStoreElement attribute) (hpcflow.sdk.persistence.types.ElemMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElement attribute) start (hpcflow.app.NumCores attribute) (hpcflow.sdk.core.environment.NumCores attribute) start_helper() (in module hpcflow.sdk.helper.helper) start_time (hpcflow.app.ElementActionRun property) (hpcflow.app.Jobscript property) (hpcflow.app.Submission property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.json.JsonStoreEAR attribute) (hpcflow.sdk.persistence.types.RunMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.submission.Submission property) (hpcflow.sdk.typing.KnownSubmission attribute) (hpcflow.sdk.typing.KnownSubmissionItem attribute) start_time_obj (hpcflow.sdk.typing.KnownSubmissionItem attribute) stat_info() (hpcflow.sdk.core.utils.JSONLikeDirSnapShot method) state_lookup (hpcflow.app.SGEPosix attribute) (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.sge.SGEPosix attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute) status (hpcflow.app.ElementActionRun property) (hpcflow.app.Submission property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.submission.submission.Submission property) stderr (hpcflow.app.Command attribute) (hpcflow.sdk.core.commands.Command attribute) (hpcflow.sdk.core.types.JobscriptSubmissionFailureArgs attribute) stdin (hpcflow.app.Command attribute) (hpcflow.sdk.core.commands.Command attribute) stdout (hpcflow.app.Command attribute) (hpcflow.sdk.core.commands.Command attribute) (hpcflow.sdk.core.types.JobscriptSubmissionFailureArgs attribute) stem (hpcflow.app.FileNameSpec property) (hpcflow.app.FileSpec property) (hpcflow.sdk.core.command_files.FileNameSpec property) (hpcflow.sdk.core.command_files.FileSpec property) step (hpcflow.app.NumCores attribute) (hpcflow.sdk.core.environment.NumCores attribute) stop (hpcflow.app.NumCores attribute) (hpcflow.sdk.core.environment.NumCores attribute) stop() (hpcflow.sdk.helper.watcher.MonitorController method) (hpcflow.sdk.helper.watcher.WorkflowMonitor method) stop_helper() (in module hpcflow.sdk.helper.helper) store_cls_from_str() (in module hpcflow.sdk.persistence) (in module hpcflow.sdk.persistence.discovery) store_contents (hpcflow.app.InputFile property) (hpcflow.app.InputFileGeneratorSource property) (hpcflow.app.OutputFileParserSource property) (hpcflow.sdk.core.command_files.InputFile property) (hpcflow.sdk.core.command_files.InputFileGeneratorSource property) (hpcflow.sdk.core.command_files.OutputFileParserSource property) (hpcflow.sdk.persistence.types.File attribute) (hpcflow.sdk.persistence.types.FileDescriptor attribute) store_format (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) store_kwargs (hpcflow.app.WorkflowTemplate attribute) (hpcflow.sdk.core.workflow.WorkflowTemplate attribute) store_option() (in module hpcflow.sdk.cli_common) StoreCreationInfo (class in hpcflow.sdk.persistence.types) StoreEAR (class in hpcflow.sdk.persistence.base) StoreElement (class in hpcflow.sdk.persistence.base) StoreElementIter (class in hpcflow.sdk.persistence.base) StoreParameter (class in hpcflow.sdk.persistence.base) StoreResource (class in hpcflow.sdk.persistence.store_resource) StoreTask (class in hpcflow.sdk.persistence.base) string_option() (in module hpcflow.sdk.cli) Strs (in module hpcflow.sdk.core.test_utils) SUB_IDX hpcflow-workflow-WORKFLOW_REF-sub command line option sub_idx (hpcflow.sdk.submission.types.JobscriptHeaderArgs attribute) (hpcflow.sdk.typing.KnownSubmission attribute) (hpcflow.sdk.typing.KnownSubmissionItem attribute) sub_param (hpcflow.sdk.core.test_utils.P1_parameter_cls attribute) sub_param_prop (hpcflow.sdk.core.test_utils.P1_parameter_cls property) sub_parameters (hpcflow.app.Parameter attribute) (hpcflow.sdk.core.parameters.Parameter attribute) sub_tasks_callback() (in module hpcflow.sdk.cli_common) Submission (class in hpcflow.app) (class in hpcflow.sdk.submission.submission) submission (hpcflow.app.Jobscript property) (hpcflow.sdk.persistence.base.PersistentStoreFeatures attribute) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.typing.KnownSubmissionItem attribute) SUBMISSION_IDX hpcflow-internal-workflow-PATH-write-commands command line option submission_idx (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.json.JsonStoreEAR attribute) (hpcflow.sdk.persistence.types.RunMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) submission_logger (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) submission_parts (hpcflow.app.Submission property) (hpcflow.sdk.submission.submission.Submission property) SubmissionEnvironmentError SubmissionFailure SubmissionPart (class in hpcflow.sdk.submission.types) submissions (hpcflow.app.Workflow property) (hpcflow.sdk.core.types.Pending attribute) (hpcflow.sdk.core.workflow.Workflow property) (hpcflow.sdk.persistence.types.ZarrAttrsDict attribute) submissions_path (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) SubmissionStatus (class in hpcflow.sdk.submission.enums) submit() (hpcflow.app.Jobscript method) (hpcflow.app.Submission method) (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.submission.jobscript.Jobscript method) (hpcflow.sdk.submission.submission.Submission method) submit_cmd (hpcflow.sdk.core.types.JobscriptSubmissionFailureArgs attribute) (hpcflow.sdk.submission.schedulers.sge.SGEPosix attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute) submit_cmdline (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.types.JobScriptCreationArguments attribute) submit_hostname (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.types.JobScriptCreationArguments attribute) submit_machine (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.types.JobScriptCreationArguments attribute) submit_status_opt() (in module hpcflow.sdk.cli_common) submit_time (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.types.JobScriptCreationArguments attribute) (hpcflow.sdk.submission.types.SubmissionPart attribute) (hpcflow.sdk.typing.KnownSubmission attribute) (hpcflow.sdk.typing.KnownSubmissionItem attribute) submit_time_obj (hpcflow.sdk.typing.KnownSubmissionItem attribute) submit_workflow (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) submit_workflow() (in module hpcflow.app) submitted (hpcflow.sdk.core.enums.EARStatus attribute) SUBMITTED (hpcflow.sdk.submission.enums.SubmissionStatus attribute) submitted_jobscripts (hpcflow.app.Submission property) (hpcflow.sdk.submission.submission.Submission property) SubParameter (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) subprocess_exc (hpcflow.sdk.core.types.JobscriptSubmissionFailureArgs attribute) substitute_string_vars() (in module hpcflow.sdk.core.utils) success (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.enums.EARStatus attribute) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.json.JsonStoreEAR attribute) (hpcflow.sdk.persistence.types.RunMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) sum() (hpcflow.sdk.core.test_utils.P1_parameter_cls static method) summarise_string() (hpcflow.sdk.log.TimeIt class method) swap_nested_dict_keys() (in module hpcflow.sdk.core.utils) symbol (hpcflow.sdk.core.enums.EARStatus attribute) (hpcflow.sdk.submission.enums.JobscriptElementState attribute) sys_base_prefix (hpcflow.sdk.runtime.RunTimeInfo attribute) sys_prefix (hpcflow.sdk.runtime.RunTimeInfo attribute) sys_real_prefix (hpcflow.sdk.runtime.RunTimeInfo attribute)

T

take() (hpcflow.sdk.core.utils.JSONLikeDirSnapShot method) take_snapshot() (hpcflow.app.RunDirAppFiles class method) (hpcflow.sdk.core.run_dir_files.RunDirAppFiles class method) Task (class in hpcflow.app) (class in hpcflow.sdk.core.task) task (hpcflow.app.Element property) (hpcflow.app.ElementAction property) (hpcflow.app.ElementActionRun property) (hpcflow.app.ElementIteration property) (hpcflow.app.ElementParameter attribute) (hpcflow.app.ElementPropagation attribute) (hpcflow.app.Elements property) (hpcflow.app.ElementSet property) TASK (hpcflow.app.InputSourceType attribute) task (hpcflow.app.ParameterPath attribute) (hpcflow.app.Parameters attribute) (hpcflow.app.TaskInputParameters attribute) (hpcflow.app.TaskOutputParameters attribute) (hpcflow.sdk.core.actions.ElementAction property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.core.element.ElementParameter attribute) (hpcflow.sdk.core.parameters.ParameterPath attribute) (hpcflow.sdk.core.task.ElementPropagation attribute) (hpcflow.sdk.core.task.Elements property) (hpcflow.sdk.core.task.ElementSet property) (hpcflow.sdk.core.task.Parameters attribute) (hpcflow.sdk.core.task.TaskInputParameters attribute) (hpcflow.sdk.core.task.TaskOutputParameters attribute) task() (hpcflow.app.InputSource class method) (hpcflow.sdk.core.parameters.InputSource class method) task_actions (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.types.JobScriptCreationArguments attribute) task_artifacts_path (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) task_cache (hpcflow.sdk.persistence.base.PersistentStore property) (hpcflow.sdk.persistence.json.JSONPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore property) task_elements (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.types.JobScriptCreationArguments attribute) task_ID (hpcflow.sdk.persistence.base.StoreElement attribute) (hpcflow.sdk.persistence.json.JsonStoreElement attribute) (hpcflow.sdk.persistence.types.ElemMeta attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElement attribute) task_idx (hpcflow.sdk.typing.ParamSource attribute) task_indices (hpcflow.app.WorkflowLoop property) (hpcflow.sdk.core.loop.WorkflowLoop property) task_insert_ID (hpcflow.sdk.core.types.ElementDescriptor attribute) (hpcflow.sdk.typing.ParamSource attribute) task_insert_IDs (hpcflow.app.Jobscript property) (hpcflow.app.Loop property) (hpcflow.app.WorkflowLoop property) (hpcflow.sdk.core.loop.Loop property) (hpcflow.sdk.core.loop.WorkflowLoop property) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.types.JobScriptCreationArguments attribute) task_iterations (hpcflow.sdk.core.loop_cache.LoopCache attribute) task_loop_idx (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.types.JobScriptCreationArguments attribute) task_objects (hpcflow.app.Loop property) (hpcflow.app.WorkflowLoop property) (hpcflow.sdk.core.loop.Loop property) (hpcflow.sdk.core.loop.WorkflowLoop property) task_ref (hpcflow.app.InputSource attribute) (hpcflow.sdk.core.parameters.InputSource attribute) task_schema (hpcflow.app.Action property) (hpcflow.app.SchemaInput property) (hpcflow.sdk.core.actions.Action property) (hpcflow.sdk.core.parameters.SchemaInput property) task_schema_sources (hpcflow.sdk.config.config.Config property) (hpcflow.sdk.config.types.ConfigDescriptor attribute) task_schemas (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) (hpcflow.sdk.typing.TemplateComponents attribute) task_source_type (hpcflow.app.InputSource attribute) (hpcflow.sdk.core.parameters.InputSource attribute) task_template (hpcflow.app.ElementSet property) (hpcflow.app.TaskSchema property) (hpcflow.sdk.core.task.ElementSet property) (hpcflow.sdk.core.task_schema.TaskSchema property) (hpcflow.sdk.persistence.base.StoreTask attribute) (hpcflow.sdk.persistence.json.JsonStoreTask attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreTask attribute) TaskInputParameters (class in hpcflow.app) (class in hpcflow.sdk.core.task) TaskList (class in hpcflow.app) (class in hpcflow.sdk.core.object_list) TaskMeta (class in hpcflow.sdk.persistence.types) TaskObjective (class in hpcflow.app) (class in hpcflow.sdk.core.task_schema) TaskOutputParameters (class in hpcflow.app) (class in hpcflow.sdk.core.task) tasks (hpcflow.app.Workflow property) (hpcflow.app.WorkflowTemplate attribute) (hpcflow.sdk.core.types.Pending attribute) (hpcflow.sdk.core.workflow.Workflow property) (hpcflow.sdk.core.workflow.WorkflowTemplate attribute) (hpcflow.sdk.persistence.types.Metadata attribute) (hpcflow.sdk.persistence.types.PersistenceCache attribute) (hpcflow.sdk.persistence.types.TemplateMeta attribute) (hpcflow.sdk.persistence.types.ZarrAttrsDict attribute) tasks_opt() (in module hpcflow.sdk.cli_common) TaskSchema (class in hpcflow.app) (class in hpcflow.sdk.core.task_schema) TaskSchemaMissingParameterError TaskSchemasList (class in hpcflow.app) (class in hpcflow.sdk.core.object_list) TaskSchemaSpecValidationError TaskSourceType (class in hpcflow.app) TaskTemplate (in module hpcflow.sdk.core.task) TaskTemplateInvalidNesting TaskTemplateList (class in hpcflow.app) (class in hpcflow.sdk.core.object_list) TaskTemplateMultipleInputValues TaskTemplateMultipleSchemaObjectives TaskTemplateUnexpectedInput TaskTemplateUnexpectedSequenceInput template (hpcflow.app.Workflow property) (hpcflow.app.WorkflowLoop property) (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.loop.WorkflowLoop property) (hpcflow.sdk.core.task.WorkflowTask property) (hpcflow.sdk.core.workflow.Workflow property) (hpcflow.sdk.persistence.types.Metadata attribute) (hpcflow.sdk.persistence.types.ZarrAttrsDict attribute) template_components (hpcflow.app.Workflow property) (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) (hpcflow.sdk.core.types.Pending attribute) (hpcflow.sdk.core.workflow.Workflow property) (hpcflow.sdk.persistence.types.Metadata attribute) (hpcflow.sdk.persistence.types.ZarrAttrsDict attribute) template_components_from_json_like() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) TEMPLATE_FILE_OR_STR hpcflow-go command line option hpcflow-make command line option TemplateComponents (class in hpcflow.sdk.typing) TemplateMeta (class in hpcflow.sdk.persistence.types) temporary_rename() (hpcflow.app.Workflow class method) (hpcflow.sdk.core.workflow.Workflow class method) termination (hpcflow.app.Loop property) (hpcflow.sdk.core.loop.Loop property) test() (hpcflow.app.ActionRule method) (hpcflow.app.Rule method) (hpcflow.sdk.core.actions.ActionRule method) (hpcflow.sdk.core.rule.Rule method) test_rules() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) test_termination() (hpcflow.app.WorkflowLoop method) (hpcflow.sdk.core.loop.WorkflowLoop method) time_limit (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.types.ResourceSpecArgs attribute) timedelta_format() (in module hpcflow.sdk.core.utils) timedelta_parse() (in module hpcflow.sdk.core.utils) TimeIt (class in hpcflow.sdk.log) timeit (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) timeout_check_interval_option() (in module hpcflow.sdk.helper.cli) timeout_option() (in module hpcflow.sdk.helper.cli) timers (hpcflow.sdk.log.TimeIt attribute) to_dict() (hpcflow.app.Action method) (hpcflow.app.ActionEnvironment method) (hpcflow.app.ActionRule method) (hpcflow.app.ActionScope method) (hpcflow.app.Command method) (hpcflow.app.CommandFilesList method) (hpcflow.app.ElementFilter method) (hpcflow.app.ElementGroup method) (hpcflow.app.ElementResources method) (hpcflow.app.ElementSet method) (hpcflow.app.Environment method) (hpcflow.app.EnvironmentsList method) (hpcflow.app.Executable method) (hpcflow.app.ExecutableInstance method) (hpcflow.app.ExecutablesList method) (hpcflow.app.FileNameExt method) (hpcflow.app.FileNameSpec method) (hpcflow.app.FileNameStem method) (hpcflow.app.FileSpec method) (hpcflow.app.GroupList method) (hpcflow.app.InputFile method) (hpcflow.app.InputFileGenerator method) (hpcflow.app.InputFileGeneratorSource method) (hpcflow.app.InputSource method) (hpcflow.app.InputValue method) (hpcflow.app.Jobscript method) (hpcflow.app.Loop method) (hpcflow.app.NumCores method) (hpcflow.app.OutputFileParser method) (hpcflow.app.OutputFileParserSource method) (hpcflow.app.OutputLabel method) (hpcflow.app.Parameter method) (hpcflow.app.ParameterPath method) (hpcflow.app.ParametersList method) (hpcflow.app.ParameterValue method) (hpcflow.app.ResourceList method) (hpcflow.app.ResourceSpec method) (hpcflow.app.Rule method) (hpcflow.app.SchemaInput method) (hpcflow.app.SchemaOutput method) (hpcflow.app.SchemaParameter method) (hpcflow.app.Submission method) (hpcflow.app.Task method) (hpcflow.app.TaskList method) (hpcflow.app.TaskObjective method) (hpcflow.app.TaskSchema method) (hpcflow.app.TaskSchemasList method) (hpcflow.app.TaskTemplateList method) (hpcflow.app.ValuePerturbation method) (hpcflow.app.ValueSequence method) (hpcflow.app.WorkflowLoopList method) (hpcflow.app.WorkflowTaskList method) (hpcflow.app.WorkflowTemplate method) (hpcflow.sdk.core.actions.Action method) (hpcflow.sdk.core.actions.ActionEnvironment method) (hpcflow.sdk.core.actions.ActionRule method) (hpcflow.sdk.core.actions.ActionScope method) (hpcflow.sdk.core.command_files.FileNameExt method) (hpcflow.sdk.core.command_files.FileNameSpec method) (hpcflow.sdk.core.command_files.FileNameStem method) (hpcflow.sdk.core.command_files.FileSpec method) (hpcflow.sdk.core.command_files.InputFile method) (hpcflow.sdk.core.command_files.InputFileGenerator method) (hpcflow.sdk.core.command_files.InputFileGeneratorSource method) (hpcflow.sdk.core.command_files.OutputFileParser method) (hpcflow.sdk.core.command_files.OutputFileParserSource method) (hpcflow.sdk.core.commands.Command method) (hpcflow.sdk.core.element.ElementFilter method) (hpcflow.sdk.core.element.ElementGroup method) (hpcflow.sdk.core.element.ElementResources method) (hpcflow.sdk.core.environment.Environment method) (hpcflow.sdk.core.environment.Executable method) (hpcflow.sdk.core.environment.ExecutableInstance method) (hpcflow.sdk.core.environment.NumCores method) (hpcflow.sdk.core.json_like.BaseJSONLike method) (hpcflow.sdk.core.json_like.JSONLike method) (hpcflow.sdk.core.loop.Loop method) (hpcflow.sdk.core.object_list.AppDataList method) (hpcflow.sdk.core.object_list.CommandFilesList method) (hpcflow.sdk.core.object_list.DotAccessObjectList method) (hpcflow.sdk.core.object_list.EnvironmentsList method) (hpcflow.sdk.core.object_list.ExecutablesList method) (hpcflow.sdk.core.object_list.GroupList method) (hpcflow.sdk.core.object_list.ObjectList method) (hpcflow.sdk.core.object_list.ParametersList method) (hpcflow.sdk.core.object_list.ResourceList method) (hpcflow.sdk.core.object_list.TaskList method) (hpcflow.sdk.core.object_list.TaskSchemasList method) (hpcflow.sdk.core.object_list.TaskTemplateList method) (hpcflow.sdk.core.object_list.WorkflowLoopList method) (hpcflow.sdk.core.object_list.WorkflowTaskList method) (hpcflow.sdk.core.parameters.AbstractInputValue method) (hpcflow.sdk.core.parameters.InputSource method) (hpcflow.sdk.core.parameters.InputValue method) (hpcflow.sdk.core.parameters.Parameter method) (hpcflow.sdk.core.parameters.ParameterPath method) (hpcflow.sdk.core.parameters.ParameterValue method) (hpcflow.sdk.core.parameters.ResourceSpec method) (hpcflow.sdk.core.parameters.SchemaInput method) (hpcflow.sdk.core.parameters.SchemaOutput method) (hpcflow.sdk.core.parameters.SchemaParameter method) (hpcflow.sdk.core.parameters.ValuePerturbation method) (hpcflow.sdk.core.parameters.ValueSequence method) (hpcflow.sdk.core.rule.Rule method) (hpcflow.sdk.core.task.ElementSet method) (hpcflow.sdk.core.task.OutputLabel method) (hpcflow.sdk.core.task.Task method) (hpcflow.sdk.core.task_schema.TaskObjective method) (hpcflow.sdk.core.task_schema.TaskSchema method) (hpcflow.sdk.core.test_utils.P1_parameter_cls method) (hpcflow.sdk.core.test_utils.P1_sub_parameter_cls method) (hpcflow.sdk.core.test_utils.P1_sub_parameter_cls_2 method) (hpcflow.sdk.core.workflow.WorkflowTemplate method) (hpcflow.sdk.core.zarr_io.ZarrEncodable method) (hpcflow.sdk.persistence.base.StoreEAR method) (hpcflow.sdk.persistence.base.StoreElement method) (hpcflow.sdk.persistence.base.StoreElementIter method) (hpcflow.sdk.persistence.json.JsonStoreEAR method) (hpcflow.sdk.persistence.json.JsonStoreElement method) (hpcflow.sdk.persistence.json.JsonStoreElementIter method) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR method) (hpcflow.sdk.persistence.zarr.ZarrStoreElement method) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter method) (hpcflow.sdk.runtime.RunTimeInfo method) (hpcflow.sdk.submission.jobscript.Jobscript method) (hpcflow.sdk.submission.submission.Submission method)

to_element_set_data() (hpcflow.app.Element method) (hpcflow.sdk.core.element.Element method) to_json_like() (hpcflow.app.Action method) (hpcflow.app.ActionEnvironment method) (hpcflow.app.ActionRule method) (hpcflow.app.ActionScope method) (hpcflow.app.Command method) (hpcflow.app.CommandFilesList method) (hpcflow.app.ElementFilter method) (hpcflow.app.ElementGroup method) (hpcflow.app.ElementResources method) (hpcflow.app.ElementSet method) (hpcflow.app.Environment method) (hpcflow.app.EnvironmentsList method) (hpcflow.app.Executable method) (hpcflow.app.ExecutableInstance method) (hpcflow.app.ExecutablesList method) (hpcflow.app.FileNameExt method) (hpcflow.app.FileNameSpec method) (hpcflow.app.FileNameStem method) (hpcflow.app.FileSpec method) (hpcflow.app.GroupList method) (hpcflow.app.InputFile method) (hpcflow.app.InputFileGenerator method) (hpcflow.app.InputFileGeneratorSource method) (hpcflow.app.InputSource method) (hpcflow.app.InputValue method) (hpcflow.app.Jobscript method) (hpcflow.app.Loop method) (hpcflow.app.NumCores method) (hpcflow.app.OutputFileParser method) (hpcflow.app.OutputFileParserSource method) (hpcflow.app.OutputLabel method) (hpcflow.app.Parameter method) (hpcflow.app.ParameterPath method) (hpcflow.app.ParametersList method) (hpcflow.app.ResourceList method) (hpcflow.app.ResourceSpec method) (hpcflow.app.Rule method) (hpcflow.app.SchemaInput method) (hpcflow.app.SchemaOutput method) (hpcflow.app.SchemaParameter method) (hpcflow.app.Submission method) (hpcflow.app.Task method) (hpcflow.app.TaskList method) (hpcflow.app.TaskObjective method) (hpcflow.app.TaskSchema method) (hpcflow.app.TaskSchemasList method) (hpcflow.app.TaskTemplateList method) (hpcflow.app.ValuePerturbation method) (hpcflow.app.ValueSequence method) (hpcflow.app.WorkflowLoopList method) (hpcflow.app.WorkflowTaskList method) (hpcflow.app.WorkflowTemplate method) (hpcflow.sdk.core.actions.Action method) (hpcflow.sdk.core.actions.ActionEnvironment method) (hpcflow.sdk.core.actions.ActionRule method) (hpcflow.sdk.core.actions.ActionScope method) (hpcflow.sdk.core.command_files.FileNameExt method) (hpcflow.sdk.core.command_files.FileNameSpec method) (hpcflow.sdk.core.command_files.FileNameStem method) (hpcflow.sdk.core.command_files.FileSpec method) (hpcflow.sdk.core.command_files.InputFile method) (hpcflow.sdk.core.command_files.InputFileGenerator method) (hpcflow.sdk.core.command_files.InputFileGeneratorSource method) (hpcflow.sdk.core.command_files.OutputFileParser method) (hpcflow.sdk.core.command_files.OutputFileParserSource method) (hpcflow.sdk.core.commands.Command method) (hpcflow.sdk.core.element.ElementFilter method) (hpcflow.sdk.core.element.ElementGroup method) (hpcflow.sdk.core.element.ElementResources method) (hpcflow.sdk.core.environment.Environment method) (hpcflow.sdk.core.environment.Executable method) (hpcflow.sdk.core.environment.ExecutableInstance method) (hpcflow.sdk.core.environment.NumCores method) (hpcflow.sdk.core.json_like.BaseJSONLike method) (hpcflow.sdk.core.json_like.JSONLike method) (hpcflow.sdk.core.loop.Loop method) (hpcflow.sdk.core.object_list.AppDataList method) (hpcflow.sdk.core.object_list.CommandFilesList method) (hpcflow.sdk.core.object_list.DotAccessObjectList method) (hpcflow.sdk.core.object_list.EnvironmentsList method) (hpcflow.sdk.core.object_list.ExecutablesList method) (hpcflow.sdk.core.object_list.GroupList method) (hpcflow.sdk.core.object_list.ObjectList method) (hpcflow.sdk.core.object_list.ParametersList method) (hpcflow.sdk.core.object_list.ResourceList method) (hpcflow.sdk.core.object_list.TaskList method) (hpcflow.sdk.core.object_list.TaskSchemasList method) (hpcflow.sdk.core.object_list.TaskTemplateList method) (hpcflow.sdk.core.object_list.WorkflowLoopList method) (hpcflow.sdk.core.object_list.WorkflowTaskList method) (hpcflow.sdk.core.parameters.AbstractInputValue method) (hpcflow.sdk.core.parameters.InputSource method) (hpcflow.sdk.core.parameters.InputValue method) (hpcflow.sdk.core.parameters.Parameter method) (hpcflow.sdk.core.parameters.ParameterPath method) (hpcflow.sdk.core.parameters.ResourceSpec method) (hpcflow.sdk.core.parameters.SchemaInput method) (hpcflow.sdk.core.parameters.SchemaOutput method) (hpcflow.sdk.core.parameters.SchemaParameter method) (hpcflow.sdk.core.parameters.ValuePerturbation method) (hpcflow.sdk.core.parameters.ValueSequence method) (hpcflow.sdk.core.rule.Rule method) (hpcflow.sdk.core.task.ElementSet method) (hpcflow.sdk.core.task.OutputLabel method) (hpcflow.sdk.core.task.Task method) (hpcflow.sdk.core.task_schema.TaskObjective method) (hpcflow.sdk.core.task_schema.TaskSchema method) (hpcflow.sdk.core.utils.JSONLikeDirSnapShot method) (hpcflow.sdk.core.workflow.WorkflowTemplate method) (hpcflow.sdk.submission.jobscript.Jobscript method) (hpcflow.sdk.submission.submission.Submission method) (in module hpcflow.sdk.core.json_like) to_persistent() (hpcflow.app.Task method) (hpcflow.sdk.core.task.Task method) to_string() (hpcflow.app.ActionScope method) (hpcflow.app.InputSource method) (hpcflow.sdk.core.actions.ActionScope method) (hpcflow.sdk.core.parameters.InputSource method) to_tree() (hpcflow.sdk.core.validation.Schema method) to_zarr() (hpcflow.sdk.core.zarr_io.ZarrEncodable method) ToJSONLikeChildReferenceError trace (hpcflow.sdk.log.TimeIt attribute) trace_idx (hpcflow.sdk.log.TimeIt attribute) trace_idx_prev (hpcflow.sdk.log.TimeIt attribute) trace_prev (hpcflow.sdk.log.TimeIt attribute) ts_fmt (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) (hpcflow.sdk.persistence.base.PersistentStore property) (hpcflow.sdk.persistence.json.JSONPersistentStore property) (hpcflow.sdk.persistence.types.Metadata attribute) (hpcflow.sdk.persistence.types.ZarrAttrsDict attribute) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore property) ts_fmt_option() (in module hpcflow.sdk.cli_common) ts_name_fmt (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) (hpcflow.sdk.persistence.types.Metadata attribute) (hpcflow.sdk.persistence.types.ZarrAttrsDict attribute) ts_name_fmt_option() (in module hpcflow.sdk.cli_common) tuples (hpcflow.sdk.persistence.types.TypeLookup attribute) twice_a (hpcflow.sdk.core.test_utils.P1_parameter_cls property) twice_e (hpcflow.sdk.core.test_utils.P1_sub_parameter_cls property) typ (hpcflow.app.ActionScope attribute) (hpcflow.app.Parameter attribute) (hpcflow.app.SchemaInput property) (hpcflow.app.SchemaOutput property) (hpcflow.app.SchemaParameter property) (hpcflow.sdk.core.actions.ActionScope attribute) (hpcflow.sdk.core.parameters.Parameter attribute) (hpcflow.sdk.core.parameters.SchemaInput property) (hpcflow.sdk.core.parameters.SchemaOutput property) (hpcflow.sdk.core.parameters.SchemaParameter property) type (hpcflow.sdk.core.types.ParentPath attribute) (hpcflow.sdk.core.types.SiblingPath attribute) (hpcflow.sdk.core.types.UpdatePath attribute) (hpcflow.sdk.typing.ParamSource attribute) type_lookup (hpcflow.sdk.persistence.types.EncodedStoreParameter attribute) TypeLookup (class in hpcflow.sdk.persistence.types)

U

UnavailableInputSource undefined_input_types (hpcflow.app.ElementSet property) (hpcflow.app.Task property) (hpcflow.sdk.core.task.ElementSet property) (hpcflow.sdk.core.task.Task property) undefined_inputs (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) unique_name (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.task.WorkflowTask property) unique_properties (hpcflow.app.DirectPosix property) (hpcflow.app.DirectWindows property) (hpcflow.app.QueuedScheduler property) (hpcflow.app.SGEPosix property) (hpcflow.app.SlurmPosix property) (hpcflow.sdk.submission.schedulers.direct.DirectPosix property) (hpcflow.sdk.submission.schedulers.direct.DirectScheduler property) (hpcflow.sdk.submission.schedulers.direct.DirectWindows property) (hpcflow.sdk.submission.schedulers.QueuedScheduler property) (hpcflow.sdk.submission.schedulers.Scheduler property) (hpcflow.sdk.submission.schedulers.sge.SGEPosix property) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix property) universal_input_types (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) UnknownEnvironmentPresetError UnknownResourceSpecItemError UnknownScriptDataKey UnknownScriptDataParameter UnknownSGEPEError UnknownSLURMPartitionError unload_config() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) unloadable (hpcflow.sdk.typing.KnownSubmissionItem attribute) UnrequiredInputSources unset() (hpcflow.sdk.config.config.Config method) UnsetParameterDataError UnsupportedOSError UnsupportedSchedulerError UnsupportedScriptDataFormat UnsupportedShellError unzip() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) unzip_log_opt() (in module hpcflow.sdk.cli_common) unzip_path_opt() (in module hpcflow.sdk.cli_common) update() (hpcflow.sdk.config.config.Config method) (hpcflow.sdk.config.types.ConfigDescriptor method) (hpcflow.sdk.config.types.ConfigMetadata method) (hpcflow.sdk.config.types.DefaultConfiguration method) (hpcflow.sdk.config.types.InvocationDescriptor method) (hpcflow.sdk.config.types.SchedulerConfigDescriptor method) (hpcflow.sdk.config.types.SGEParallelEnvsDescriptor method) (hpcflow.sdk.config.types.ShellConfigDescriptor method) (hpcflow.sdk.config.types.SLURMPartitionsDescriptor method) (hpcflow.sdk.core.loop_cache.LoopIndex method) (hpcflow.sdk.core.types.ActParameterDependence method) (hpcflow.sdk.core.types.CreationInfo method) (hpcflow.sdk.core.types.DependentDescriptor method) (hpcflow.sdk.core.types.ElementDescriptor method) (hpcflow.sdk.core.types.IterableParam method) (hpcflow.sdk.core.types.JobscriptSubmissionFailureArgs method) (hpcflow.sdk.core.types.LabelInfo method) (hpcflow.sdk.core.types.LabellingDescriptor method) (hpcflow.sdk.core.types.MultiplicityDescriptor method) (hpcflow.sdk.core.types.ParameterDependence method) (hpcflow.sdk.core.types.ParentPath method) (hpcflow.sdk.core.types.Pending method) (hpcflow.sdk.core.types.RelevantData method) (hpcflow.sdk.core.types.RepeatsDescriptor method) (hpcflow.sdk.core.types.ResourceSpecArgs method) (hpcflow.sdk.core.types.RuleArgs method) (hpcflow.sdk.core.types.SchemaInputKwargs method) (hpcflow.sdk.core.types.ScriptData method) (hpcflow.sdk.core.types.SiblingPath method) (hpcflow.sdk.core.types.UpdatePath method) (hpcflow.sdk.core.types.WorkflowTemplateTaskData method) (hpcflow.sdk.persistence.base.StoreEAR method) (hpcflow.sdk.persistence.json.JsonStoreEAR method) (hpcflow.sdk.persistence.types.ElemMeta method) (hpcflow.sdk.persistence.types.EncodedStoreParameter method) (hpcflow.sdk.persistence.types.File method) (hpcflow.sdk.persistence.types.FileDescriptor method) (hpcflow.sdk.persistence.types.IterMeta method) (hpcflow.sdk.persistence.types.LoopDescriptor method) (hpcflow.sdk.persistence.types.Metadata method) (hpcflow.sdk.persistence.types.PersistenceCache method) (hpcflow.sdk.persistence.types.RunMeta method) (hpcflow.sdk.persistence.types.StoreCreationInfo method) (hpcflow.sdk.persistence.types.TaskMeta method) (hpcflow.sdk.persistence.types.TemplateMeta method) (hpcflow.sdk.persistence.types.TypeLookup method) (hpcflow.sdk.persistence.types.ZarrAttrsDict method) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR method) (hpcflow.sdk.submission.types.JobScriptCreationArguments method) (hpcflow.sdk.submission.types.JobScriptDescriptor method) (hpcflow.sdk.submission.types.JobscriptHeaderArgs method) (hpcflow.sdk.submission.types.ResolvedDependencies method) (hpcflow.sdk.submission.types.SchedulerRef method) (hpcflow.sdk.submission.types.SubmissionPart method) (hpcflow.sdk.typing.KnownSubmission method) (hpcflow.sdk.typing.KnownSubmissionItem method) (hpcflow.sdk.typing.ParamSource method) (hpcflow.sdk.typing.TemplateComponents method)

update_console_level() (hpcflow.sdk.log.AppLog method) update_invocation() (hpcflow.sdk.config.config_file.ConfigFile method) update_known_subs_file() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) update_loop_idx() (hpcflow.sdk.persistence.base.StoreElementIter method) (hpcflow.sdk.persistence.json.JsonStoreElementIter method) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter method) update_loop_indices (hpcflow.sdk.persistence.pending.PendingChanges attribute) update_loop_indices() (hpcflow.sdk.core.loop_cache.LoopCache method) update_loop_num_iters (hpcflow.sdk.persistence.pending.PendingChanges attribute) update_loop_num_iters() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) update_loop_parents (hpcflow.sdk.persistence.pending.PendingChanges attribute) update_loop_parents() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) update_param_source() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) update_param_source_dict() (in module hpcflow.sdk.persistence.base) update_param_sources (hpcflow.sdk.persistence.pending.PendingChanges attribute) update_path (hpcflow.sdk.core.types.UpdatePath attribute) update_source() (hpcflow.sdk.persistence.base.StoreParameter method) (hpcflow.sdk.persistence.zarr.ZarrStoreParameter method) update_workflow_paths() (hpcflow.sdk.helper.watcher.WorkflowMonitor method) UpdatePath (class in hpcflow.sdk.core.types) upstream_tasks (hpcflow.app.WorkflowLoop property) (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.loop.WorkflowLoop property) (hpcflow.sdk.core.task.WorkflowTask property) url (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) url_slug (hpcflow.app.Parameter property) (hpcflow.sdk.core.parameters.Parameter property) use_cache (hpcflow.sdk.persistence.base.PersistentStore property) (hpcflow.sdk.persistence.json.JSONPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore property) use_job_array (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.types.ResourceSpecArgs attribute) user_affiliation (hpcflow.sdk.config.config.Config attribute) user_cache_dir (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) user_cache_hostname_dir (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) user_data_dir (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) user_data_hostname_dir (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) user_name (hpcflow.sdk.config.config.Config attribute) user_orcid (hpcflow.sdk.config.config.Config attribute) user_runtime_dir (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) using_resource() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method)

V

validate() (hpcflow.sdk.config.config.ConfigOptions method) (hpcflow.sdk.core.validation.Schema method) validate_against_machine() (hpcflow.app.ElementResources method) (hpcflow.sdk.core.element.ElementResources method) ValidatedData (class in hpcflow.sdk.core.validation) VALUE hpcflow-config-append command line option hpcflow-config-prepend command line option hpcflow-config-set command line option hpcflow-config-update command line option hpcflow-internal-workflow-PATH-save-parameter command line option value (hpcflow.app.ElementParameter property) (hpcflow.app.InputValue property) (hpcflow.app.ValuePerturbation property) (hpcflow.sdk.core.element.ElementParameter property) (hpcflow.sdk.core.enums.EARStatus property) (hpcflow.sdk.core.parameters.AbstractInputValue property) (hpcflow.sdk.core.parameters.InputValue property) (hpcflow.sdk.core.parameters.ValuePerturbation property) (hpcflow.sdk.submission.enums.JobscriptElementState property) value() (hpcflow.app.FileNameExt method) (hpcflow.app.FileNameSpec method) (hpcflow.app.FileNameStem method) (hpcflow.app.FileSpec method) (hpcflow.sdk.core.command_files.FileNameExt method) (hpcflow.sdk.core.command_files.FileNamePart method) (hpcflow.sdk.core.command_files.FileNameSpec method) (hpcflow.sdk.core.command_files.FileNameStem method) (hpcflow.sdk.core.command_files.FileSpec method) value_class_method (hpcflow.app.InputValue attribute) (hpcflow.app.ValueSequence attribute) (hpcflow.sdk.core.parameters.InputValue attribute) (hpcflow.sdk.core.parameters.ValueSequence attribute) (hpcflow.sdk.core.types.RelevantData attribute) (hpcflow.sdk.typing.ParamSource attribute) ValuePerturbation (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) values (hpcflow.app.ValueSequence property) (hpcflow.sdk.core.parameters.ValueSequence property) values() (hpcflow.sdk.config.types.ConfigDescriptor method) (hpcflow.sdk.config.types.ConfigMetadata method) (hpcflow.sdk.config.types.DefaultConfiguration method) (hpcflow.sdk.config.types.InvocationDescriptor method) (hpcflow.sdk.config.types.SchedulerConfigDescriptor method) (hpcflow.sdk.config.types.SGEParallelEnvsDescriptor method) (hpcflow.sdk.config.types.ShellConfigDescriptor method) (hpcflow.sdk.config.types.SLURMPartitionsDescriptor method) (hpcflow.sdk.core.loop_cache.LoopIndex method) (hpcflow.sdk.core.types.ActParameterDependence method) (hpcflow.sdk.core.types.CreationInfo method) (hpcflow.sdk.core.types.DependentDescriptor method) (hpcflow.sdk.core.types.ElementDescriptor method) (hpcflow.sdk.core.types.IterableParam method) (hpcflow.sdk.core.types.JobscriptSubmissionFailureArgs method) (hpcflow.sdk.core.types.LabelInfo method) (hpcflow.sdk.core.types.LabellingDescriptor method) (hpcflow.sdk.core.types.MultiplicityDescriptor method) (hpcflow.sdk.core.types.ParameterDependence method) (hpcflow.sdk.core.types.ParentPath method) (hpcflow.sdk.core.types.Pending method) (hpcflow.sdk.core.types.RelevantData method) (hpcflow.sdk.core.types.RepeatsDescriptor method) (hpcflow.sdk.core.types.ResourceSpecArgs method) (hpcflow.sdk.core.types.RuleArgs method) (hpcflow.sdk.core.types.SchemaInputKwargs method) (hpcflow.sdk.core.types.ScriptData method) (hpcflow.sdk.core.types.SiblingPath method) (hpcflow.sdk.core.types.UpdatePath method) (hpcflow.sdk.core.types.WorkflowTemplateTaskData method) (hpcflow.sdk.persistence.types.ElemMeta method) (hpcflow.sdk.persistence.types.EncodedStoreParameter method) (hpcflow.sdk.persistence.types.File method) (hpcflow.sdk.persistence.types.FileDescriptor method) (hpcflow.sdk.persistence.types.IterMeta method) (hpcflow.sdk.persistence.types.LoopDescriptor method) (hpcflow.sdk.persistence.types.Metadata method) (hpcflow.sdk.persistence.types.PersistenceCache method) (hpcflow.sdk.persistence.types.RunMeta method) (hpcflow.sdk.persistence.types.StoreCreationInfo method) (hpcflow.sdk.persistence.types.TaskMeta method) (hpcflow.sdk.persistence.types.TemplateMeta method) (hpcflow.sdk.persistence.types.TypeLookup method) (hpcflow.sdk.persistence.types.ZarrAttrsDict method) (hpcflow.sdk.submission.types.JobScriptCreationArguments method) (hpcflow.sdk.submission.types.JobScriptDescriptor method) (hpcflow.sdk.submission.types.JobscriptHeaderArgs method) (hpcflow.sdk.submission.types.ResolvedDependencies method) (hpcflow.sdk.submission.types.SchedulerRef method) (hpcflow.sdk.submission.types.SubmissionPart method) (hpcflow.sdk.typing.KnownSubmission method) (hpcflow.sdk.typing.KnownSubmissionItem method) (hpcflow.sdk.typing.ParamSource method) (hpcflow.sdk.typing.TemplateComponents method)

ValuesAlreadyPersistentError ValueSequence (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) variables (hpcflow.app.Command attribute) (hpcflow.sdk.core.commands.Command attribute) variables_option() (in module hpcflow.sdk.cli_common) venv_path (hpcflow.sdk.runtime.RunTimeInfo attribute) version (hpcflow.app.TaskSchema attribute) (hpcflow.sdk.app.App attribute) (hpcflow.sdk.app.BaseApp attribute) (hpcflow.sdk.core.task_schema.TaskSchema attribute) (hpcflow.sdk.runtime.RunTimeInfo attribute) version_info (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.types.JobScriptCreationArguments attribute) VersionInfo (in module hpcflow.sdk.submission.types)

W

wait() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) wait_for_jobscripts() (hpcflow.app.DirectPosix class method) (hpcflow.app.DirectWindows class method) (hpcflow.app.QueuedScheduler method) (hpcflow.app.SGEPosix method) (hpcflow.app.SlurmPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectPosix class method) (hpcflow.sdk.submission.schedulers.direct.DirectScheduler class method) (hpcflow.sdk.submission.schedulers.direct.DirectWindows class method) (hpcflow.sdk.submission.schedulers.QueuedScheduler method) (hpcflow.sdk.submission.schedulers.Scheduler method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix method) wait_option() (in module hpcflow.sdk.cli_common) waiting (hpcflow.sdk.submission.enums.JobscriptElementState attribute) walk() (hpcflow.sdk.core.utils.JSONLikeDirSnapShot method) watch_interval_option() (in module hpcflow.sdk.helper.cli) web_doc (hpcflow.app.TaskSchema attribute) (hpcflow.sdk.core.task_schema.TaskSchema attribute) where (hpcflow.app.ElementGroup attribute) (hpcflow.app.ElementRepeats attribute) (hpcflow.app.InputSource attribute) (hpcflow.app.OutputLabel attribute) (hpcflow.sdk.core.element.ElementGroup attribute) (hpcflow.sdk.core.element.ElementRepeats attribute) (hpcflow.sdk.core.parameters.InputSource attribute) (hpcflow.sdk.core.task.OutputLabel attribute) Where (in module hpcflow.sdk.core.parameters) where_pending() (hpcflow.sdk.persistence.pending.PendingChanges method) WindowsPowerShell (class in hpcflow.sdk.submission.shells.powershell) Workflow (class in hpcflow.app) (class in hpcflow.sdk.core.workflow) workflow (hpcflow.app.Element property) (hpcflow.app.ElementActionRun property) (hpcflow.app.ElementIteration property) (hpcflow.app.InputFile property) (hpcflow.app.InputFileGeneratorSource property) (hpcflow.app.InputValue property) (hpcflow.app.Jobscript property) (hpcflow.app.OutputFileParserSource property) (hpcflow.app.ResourceSpec property) (hpcflow.app.Submission property) (hpcflow.app.ValuePerturbation property) (hpcflow.app.ValueSequence property) (hpcflow.app.WorkflowLoop property) (hpcflow.app.WorkflowTask property) (hpcflow.app.WorkflowTemplate attribute) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.command_files.InputFile property) (hpcflow.sdk.core.command_files.InputFileGeneratorSource property) (hpcflow.sdk.core.command_files.OutputFileParserSource property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.core.loop.WorkflowLoop property) (hpcflow.sdk.core.parameters.AbstractInputValue property) (hpcflow.sdk.core.parameters.InputValue property) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.parameters.ValuePerturbation property) (hpcflow.sdk.core.parameters.ValueSequence property) (hpcflow.sdk.core.task.WorkflowTask property) (hpcflow.sdk.core.workflow.WorkflowTemplate attribute) (hpcflow.sdk.persistence.base.PersistentStore property) (hpcflow.sdk.persistence.json.JSONPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore property) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.submission.Submission property) workflow_app_alias (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.types.JobscriptHeaderArgs attribute) workflow_id (hpcflow.sdk.typing.KnownSubmission attribute) (hpcflow.sdk.typing.KnownSubmissionItem attribute) WORKFLOW_NAME hpcflow-demo-workflow-copy command line option hpcflow-demo-workflow-go command line option hpcflow-demo-workflow-make command line option hpcflow-demo-workflow-show command line option

WORKFLOW_PATH hpcflow-unzip command line option workflow_path (hpcflow.sdk.submission.types.JobscriptHeaderArgs attribute) (hpcflow.sdk.typing.KnownSubmissionItem attribute) WORKFLOW_REF hpcflow-cancel command line option hpcflow-open-workflow command line option hpcflow-rechunk command line option hpcflow-workflow command line option hpcflow-zip command line option workflow_ref_type_opt() (in module hpcflow.sdk.cli) workflow_template (hpcflow.app.Loop property) (hpcflow.app.ResourceList property) (hpcflow.app.ResourceSpec property) (hpcflow.app.Task attribute) (hpcflow.app.WorkflowBlueprint attribute) (hpcflow.sdk.core.loop.Loop property) (hpcflow.sdk.core.object_list.ResourceList property) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.task.Task attribute) (hpcflow.sdk.core.workflow.WorkflowBlueprint attribute) WorkflowBatchUpdateFailedError WorkflowBlueprint (class in hpcflow.app) (class in hpcflow.sdk.core.workflow) WorkflowLimitsError WorkflowLoop (class in hpcflow.app) (class in hpcflow.sdk.core.loop) WorkflowLoopList (class in hpcflow.app) (class in hpcflow.sdk.core.object_list) WorkflowMonitor (class in hpcflow.sdk.helper.watcher) WorkflowNotFoundError WorkflowParameterMissingError workflows_dir (hpcflow.sdk.app.App attribute) (hpcflow.sdk.app.BaseApp attribute) WorkflowSpecValidationError WorkflowSubmissionFailure WorkflowTask (class in hpcflow.app) (class in hpcflow.sdk.core.task) WorkflowTaskList (class in hpcflow.app) (class in hpcflow.sdk.core.object_list) WorkflowTemplate (class in hpcflow.app) (class in hpcflow.sdk.core.workflow) WorkflowTemplateTaskData (class in hpcflow.sdk.core.types) working_dir (hpcflow.sdk.runtime.RunTimeInfo attribute) wrap_in_subshell() (hpcflow.sdk.submission.shells.base.Shell method) (hpcflow.sdk.submission.shells.bash.Bash method) (hpcflow.sdk.submission.shells.bash.WSLBash method) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell method) write_commands() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) write_EAR_ID_file() (hpcflow.app.Jobscript method) (hpcflow.sdk.submission.jobscript.Jobscript method) write_element_run_dir_file() (hpcflow.app.Jobscript method) (hpcflow.sdk.submission.jobscript.Jobscript method) write_empty_workflow() (hpcflow.sdk.persistence.base.PersistentStore class method) (hpcflow.sdk.persistence.json.JSONPersistentStore class method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore class method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore class method) write_jobscript() (hpcflow.app.Jobscript method) (hpcflow.sdk.submission.jobscript.Jobscript method) write_JSON_file() (in module hpcflow.sdk.core.utils) write_source() (hpcflow.app.ElementActionRun method) (hpcflow.app.InputFileGenerator method) (hpcflow.app.OutputFileParser method) (hpcflow.sdk.core.actions.ElementActionRun method) (hpcflow.sdk.core.command_files.InputFileGenerator method) (hpcflow.sdk.core.command_files.OutputFileParser method) write_YAML_file() (in module hpcflow.sdk.core.utils) WSL_distribution (hpcflow.sdk.submission.shells.bash.WSLBash attribute) WSL_executable (hpcflow.sdk.submission.shells.bash.WSLBash attribute) WSL_user (hpcflow.sdk.submission.shells.bash.WSLBash attribute) WSLBash (class in hpcflow.sdk.submission.shells.bash)

Z

zarr_decode() (in module hpcflow.sdk.core.zarr_io) zarr_encode() (in module hpcflow.sdk.core.zarr_io) zarr_store (hpcflow.sdk.persistence.zarr.ZarrPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore property) ZarrAttrs (in module hpcflow.sdk.persistence.zarr) ZarrAttrsDict (class in hpcflow.sdk.persistence.types) ZarrAttrsStoreResource (class in hpcflow.sdk.persistence.store_resource) ZarrEncodable (class in hpcflow.sdk.core.zarr_io) ZarrPersistentStore (class in hpcflow.sdk.persistence.zarr) ZarrStoreEAR (class in hpcflow.sdk.persistence.zarr) ZarrStoreElement (class in hpcflow.sdk.persistence.zarr) ZarrStoreElementIter (class in hpcflow.sdk.persistence.zarr) ZarrStoreParameter (class in hpcflow.sdk.persistence.zarr)

ZarrStoreTask (class in hpcflow.sdk.persistence.zarr) ZarrZipPersistentStore (class in hpcflow.sdk.persistence.zarr) zeroth_iters (hpcflow.sdk.core.loop_cache.LoopCache attribute) zip() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) zip_include_execute_opt() (in module hpcflow.sdk.cli_common) zip_include_rechunk_backups_opt() (in module hpcflow.sdk.cli_common) zip_log_opt() (in module hpcflow.sdk.cli_common) zip_overwrite_opt() (in module hpcflow.sdk.cli_common) zip_path_opt() (in module hpcflow.sdk.cli_common)