Index

Symbols

--all hpcflow-config-get command line option --clear-known-subs hpcflow command line option --config-dir hpcflow command line option hpcflow-get-config-path command line option hpcflow-reset-config command line option --config-invocation-key hpcflow command line option --defaults hpcflow-config-add-scheduler command line option --exclude-os hpcflow-submission-shell-info command line option --file hpcflow-config-get command line option hpcflow-helper-pid command line option --format hpcflow-go command line option hpcflow-make command line option --full hpcflow-show command line option --help hpcflow command line option --hpcflow-version hpcflow command line option --infile1 hpcflow-demo-software-doSomething command line option --infile2 hpcflow-demo-software-doSomething command line option --invocation hpcflow-config command line option --js-parallelism hpcflow-go command line option hpcflow-workflow-WORKFLOW_REF-submit command line option --json hpcflow-config-append command line option hpcflow-config-prepend command line option hpcflow-config-set command line option hpcflow-config-update command line option --legend hpcflow-show command line option --log hpcflow-workflow-WORKFLOW_REF-zip command line option hpcflow-zip command line option --max-recent hpcflow-show command line option --name hpcflow-go command line option hpcflow-make command line option hpcflow-open-env-source command line option --no-update hpcflow-show command line option --os-info hpcflow-submission command line option --out hpcflow-demo-software-doSomething command line option --overwrite hpcflow-go command line option hpcflow-make command line option --path hpcflow-go command line option hpcflow-make command line option hpcflow-open-config command line option hpcflow-open-env-source command line option hpcflow-open-known-subs command line option hpcflow-open-log command line option hpcflow-open-user-data-dir command line option hpcflow-open-workflow command line option

--ref-type hpcflow-cancel command line option hpcflow-open-workflow command line option hpcflow-workflow command line option hpcflow-zip command line option --run-time-info hpcflow command line option --store hpcflow-go command line option hpcflow-make command line option --string hpcflow-go command line option hpcflow-make command line option --timeout hpcflow-helper-restart command line option hpcflow-helper-run command line option hpcflow-helper-start command line option --timeout-check-interval hpcflow-helper-restart command line option hpcflow-helper-run command line option hpcflow-helper-start command line option --ts-fmt hpcflow-go command line option hpcflow-make command line option --ts-name-fmt hpcflow-go command line option hpcflow-make command line option --value hpcflow-demo-software-doSomething command line option --version hpcflow command line option --wait hpcflow-go command line option hpcflow-workflow-WORKFLOW_REF-submit command line option --watch-interval hpcflow-helper-restart command line option hpcflow-helper-run command line option hpcflow-helper-start command line option --with-config hpcflow command line option -f hpcflow-helper-pid command line option hpcflow-show command line option -i1 hpcflow-demo-software-doSomething command line option -i2 hpcflow-demo-software-doSomething command line option -o hpcflow-demo-software-doSomething command line option -r hpcflow-cancel command line option hpcflow-open-workflow command line option hpcflow-show command line option hpcflow-workflow command line option hpcflow-zip command line option -v hpcflow-demo-software-doSomething command line option

A

a (hpcflow.sdk.core.test_utils.P1_parameter_cls attribute) abort_EARs_file_name (hpcflow.app.Submission property) (hpcflow.sdk.submission.submission.Submission property) abort_EARs_file_path (hpcflow.app.Submission property) (hpcflow.sdk.submission.submission.Submission property) abortable (hpcflow.app.InputFileGenerator attribute) (hpcflow.app.OutputFileParser attribute) (hpcflow.sdk.core.command_files.InputFileGenerator attribute) (hpcflow.sdk.core.command_files.OutputFileParser attribute) aborted (hpcflow.sdk.core.actions.EARStatus attribute) AbstractInputValue (class in hpcflow.sdk.core.parameters) Action (class in hpcflow.app) (class in hpcflow.sdk.core.actions) action (hpcflow.app.ElementAction property) (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ElementAction property) (hpcflow.sdk.core.actions.ElementActionRun property) action_idx (hpcflow.app.ElementAction property) (hpcflow.sdk.core.actions.ElementAction property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) action_runs (hpcflow.app.Element property) (hpcflow.app.ElementIteration property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property) ActionEnvironment (class in hpcflow.app) (class in hpcflow.sdk.core.actions) ActionRule (class in hpcflow.app) (class in hpcflow.sdk.core.actions) actions (hpcflow.app.Element property) (hpcflow.app.ElementIteration property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property) ActionScope (class in hpcflow.app) (class in hpcflow.sdk.core.actions) ActionScopeType (class in hpcflow.app) add_EAR() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) add_element() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) add_element_iteration() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) add_element_set() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) add_elements() (hpcflow.app.WorkflowTask method) (hpcflow.sdk.core.task.WorkflowTask method) add_file() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) add_file_logger() (hpcflow.sdk.log.AppLog method) add_group() (hpcflow.app.Task method) (hpcflow.sdk.core.task.Task method) add_iteration() (hpcflow.app.WorkflowLoop method) (hpcflow.sdk.core.loop.WorkflowLoop method) add_loop() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) add_object() (hpcflow.app.CommandFilesList method) (hpcflow.app.EnvironmentsList method) (hpcflow.app.ExecutablesList method) (hpcflow.app.GroupList method) (hpcflow.app.ParametersList method) (hpcflow.app.ResourceList method) (hpcflow.app.TaskList method) (hpcflow.app.TaskSchemasList method) (hpcflow.app.TaskTemplateList method) (hpcflow.app.WorkflowLoopList method) (hpcflow.app.WorkflowTaskList method) (hpcflow.sdk.core.object_list.AppDataList method) (hpcflow.sdk.core.object_list.CommandFilesList method) (hpcflow.sdk.core.object_list.DotAccessObjectList method) (hpcflow.sdk.core.object_list.EnvironmentsList method) (hpcflow.sdk.core.object_list.ExecutablesList method) (hpcflow.sdk.core.object_list.GroupList method) (hpcflow.sdk.core.object_list.ObjectList method) (hpcflow.sdk.core.object_list.ParametersList method) (hpcflow.sdk.core.object_list.ResourceList method) (hpcflow.sdk.core.object_list.TaskList method) (hpcflow.sdk.core.object_list.TaskSchemasList method) (hpcflow.sdk.core.object_list.TaskTemplateList method) (hpcflow.sdk.core.object_list.WorkflowLoopList method) (hpcflow.sdk.core.object_list.WorkflowTaskList method) add_objects() (hpcflow.app.CommandFilesList method) (hpcflow.app.EnvironmentsList method) (hpcflow.app.ExecutablesList method) (hpcflow.app.GroupList method) (hpcflow.app.ParametersList method) (hpcflow.app.TaskList method) (hpcflow.app.TaskSchemasList method) (hpcflow.app.TaskTemplateList method) (hpcflow.app.WorkflowLoopList method) (hpcflow.app.WorkflowTaskList method) (hpcflow.sdk.core.object_list.AppDataList method) (hpcflow.sdk.core.object_list.CommandFilesList method) (hpcflow.sdk.core.object_list.DotAccessObjectList method) (hpcflow.sdk.core.object_list.EnvironmentsList method) (hpcflow.sdk.core.object_list.ExecutablesList method) (hpcflow.sdk.core.object_list.GroupList method) (hpcflow.sdk.core.object_list.ParametersList method) (hpcflow.sdk.core.object_list.TaskList method) (hpcflow.sdk.core.object_list.TaskSchemasList method) (hpcflow.sdk.core.object_list.TaskTemplateList method) (hpcflow.sdk.core.object_list.WorkflowLoopList method) (hpcflow.sdk.core.object_list.WorkflowTaskList method) add_scheduler() (hpcflow.sdk.config.config.Config method) add_set_parameter() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) add_submission() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method)

add_submission_part() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) add_task() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) add_task_after() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) add_task_before() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) add_template_components() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) add_unset_parameter() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) additive_factor (hpcflow.app.ValuePerturbation attribute) (hpcflow.sdk.core.parameters.ValuePerturbation attribute) address (hpcflow.app.SubParameter attribute) (hpcflow.sdk.core.parameters.SubParameter attribute) all_EAR_IDs (hpcflow.app.Submission property) (hpcflow.sdk.submission.submission.Submission property) all_EARs (hpcflow.app.Jobscript property) (hpcflow.app.Submission property) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.submission.Submission property) all_labelled_types (hpcflow.app.SchemaInput property) (hpcflow.sdk.core.parameters.SchemaInput property) all_schema_actions() (hpcflow.app.Task method) (hpcflow.sdk.core.task.Task method) all_schema_input_normalised_paths (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) all_schema_input_types (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) all_schema_inputs (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) all_schema_output_types (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) all_schema_outputs (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) all_sourced_normalised_paths (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) ALLOWED_PARAMETERS (hpcflow.app.ResourceSpec attribute) (hpcflow.sdk.core.parameters.ResourceSpec attribute) ANY (hpcflow.app.ActionScopeType attribute) (hpcflow.app.TaskSourceType attribute) any() (hpcflow.app.ActionScope class method) (hpcflow.sdk.core.actions.ActionScope class method) API_logger (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) App (class in hpcflow.sdk.app) app (hpcflow.app.Action attribute) (hpcflow.app.ActionEnvironment attribute) (hpcflow.app.ActionRule attribute) (hpcflow.app.ActionScope attribute) (hpcflow.app.Command attribute) (hpcflow.app.DirectPosix attribute) (hpcflow.app.DirectWindows attribute) (hpcflow.app.Element attribute) (hpcflow.app.ElementAction attribute) (hpcflow.app.ElementActionRun attribute) (hpcflow.app.ElementGroup attribute) (hpcflow.app.ElementIteration attribute) (hpcflow.app.ElementParameter attribute) (hpcflow.app.ElementPropagation attribute) (hpcflow.app.ElementResources attribute) (hpcflow.app.ElementSet attribute) (hpcflow.app.Environment attribute) (hpcflow.app.Executable attribute) (hpcflow.app.ExecutableInstance attribute) (hpcflow.app.FileNameExt attribute) (hpcflow.app.FileNameSpec attribute) (hpcflow.app.FileNameStem attribute) (hpcflow.app.FileSpec attribute) (hpcflow.app.InputFile attribute) (hpcflow.app.InputFileGenerator attribute) (hpcflow.app.InputFileGeneratorSource attribute) (hpcflow.app.InputSource attribute) (hpcflow.app.InputValue attribute) (hpcflow.app.Jobscript attribute) (hpcflow.app.Loop attribute) (hpcflow.app.NumCores attribute) (hpcflow.app.OutputFileParser attribute) (hpcflow.app.OutputFileParserSource attribute) (hpcflow.app.OutputLabel attribute) (hpcflow.app.Parameter attribute) (hpcflow.app.ParameterPath attribute) (hpcflow.app.ResourceSpec attribute) (hpcflow.app.SchemaInput attribute) (hpcflow.app.SchemaOutput attribute) (hpcflow.app.SchemaParameter attribute) (hpcflow.app.SGEPosix attribute) (hpcflow.app.SlurmPosix attribute) (hpcflow.app.Submission attribute) (hpcflow.app.Task attribute) (hpcflow.app.TaskObjective attribute) (hpcflow.app.TaskSchema attribute) (hpcflow.app.ValuePerturbation attribute) (hpcflow.app.ValueSequence attribute) (hpcflow.app.Workflow attribute) (hpcflow.app.WorkflowLoop attribute) (hpcflow.app.WorkflowLoopList attribute) (hpcflow.app.WorkflowTask attribute) (hpcflow.app.WorkflowTaskList attribute) (hpcflow.app.WorkflowTemplate attribute) (in module hpcflow.app) AppDataList (class in hpcflow.sdk.core.object_list) append() (hpcflow.sdk.config.config.Config method) append_EAR_IDs() (hpcflow.sdk.persistence.base.StoreElementIter method) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter method) append_element_IDs() (hpcflow.sdk.persistence.base.StoreTask method) (hpcflow.sdk.persistence.zarr.ZarrStoreTask method) append_items_to_ragged_array() (in module hpcflow.sdk.persistence.zarr) append_iteration_IDs() (hpcflow.sdk.persistence.base.StoreElement method) (hpcflow.sdk.persistence.zarr.ZarrStoreElement method) AppLog (class in hpcflow.sdk.log) arguments (hpcflow.app.Command attribute) (hpcflow.sdk.core.commands.Command attribute) artifacts_path (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) ask_pw_on_auth_exc() (in module hpcflow.sdk.persistence.utils)

B

BaseApp (class in hpcflow.sdk.app) BaseJSONLike (class in hpcflow.sdk.core.json_like) Bash (class in hpcflow.sdk.submission.shells.bash)

batch_update() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) bisect_slice() (in module hpcflow.sdk.core.utils) BuiltinSchemaParameter (class in hpcflow.sdk.core.parameters)

C

cached_load() (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) callback_bool() (in module hpcflow.sdk.config.callbacks) callback_file_paths() (in module hpcflow.sdk.config.callbacks) callback_lowercase() (in module hpcflow.sdk.config.callbacks) callback_supported_schedulers() (in module hpcflow.sdk.config.callbacks) callback_supported_shells() (in module hpcflow.sdk.config.callbacks) callback_vars() (in module hpcflow.sdk.config.callbacks) cancel() (hpcflow.app.Jobscript method) (hpcflow.app.Submission method) (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.submission.jobscript.Jobscript method) (hpcflow.sdk.submission.submission.Submission method) (in module hpcflow.app) cancel_jobs() (hpcflow.app.DirectPosix method) (hpcflow.app.DirectWindows method) (hpcflow.app.SGEPosix method) (hpcflow.app.SlurmPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectScheduler method) (hpcflow.sdk.submission.schedulers.direct.DirectWindows method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix method) cancelled (hpcflow.sdk.submission.jobscript_info.JobscriptElementState attribute) capitalise_first_letter() (in module hpcflow.sdk.core.utils) check_exists (hpcflow.app.ActionRule attribute) (hpcflow.sdk.core.actions.ActionRule attribute) check_in_object_list() (in module hpcflow.sdk.core.utils) check_load_data_files() (in module hpcflow.sdk.config.callbacks) check_missing (hpcflow.app.ActionRule attribute) (hpcflow.sdk.core.actions.ActionRule attribute) check_parameters_exist() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) check_valid_py_identifier() (in module hpcflow.sdk.core.utils) ChildObjectSpec (class in hpcflow.sdk.core.json_like) class_name (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) class_obj (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) classproperty (class in hpcflow.sdk.core.utils) clean_up (hpcflow.app.OutputFileParser attribute) (hpcflow.sdk.core.command_files.OutputFileParser attribute) clear_add_EARs() (hpcflow.sdk.persistence.pending.PendingChanges method) clear_add_elem_IDs() (hpcflow.sdk.persistence.pending.PendingChanges method) clear_add_elem_iter_EAR_IDs() (hpcflow.sdk.persistence.pending.PendingChanges method) clear_add_elem_iter_IDs() (hpcflow.sdk.persistence.pending.PendingChanges method) clear_add_elem_iters() (hpcflow.sdk.persistence.pending.PendingChanges method) clear_add_element_sets() (hpcflow.sdk.persistence.pending.PendingChanges method) clear_add_elements() (hpcflow.sdk.persistence.pending.PendingChanges method) clear_add_files() (hpcflow.sdk.persistence.pending.PendingChanges method) clear_add_loops() (hpcflow.sdk.persistence.pending.PendingChanges method) clear_add_parameters() (hpcflow.sdk.persistence.pending.PendingChanges method) clear_add_submission_parts() (hpcflow.sdk.persistence.pending.PendingChanges method) clear_add_submissions() (hpcflow.sdk.persistence.pending.PendingChanges method) clear_add_tasks() (hpcflow.sdk.persistence.pending.PendingChanges method) clear_add_template_components() (hpcflow.sdk.persistence.pending.PendingChanges method) clear_helper() (in module hpcflow.sdk.helper.helper) clear_known_submissions_file() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) clear_set_EAR_ends() (hpcflow.sdk.persistence.pending.PendingChanges method) clear_set_EAR_skips() (hpcflow.sdk.persistence.pending.PendingChanges method) clear_set_EAR_starts() (hpcflow.sdk.persistence.pending.PendingChanges method) clear_set_EAR_submission_indices() (hpcflow.sdk.persistence.pending.PendingChanges method) clear_set_EARs_initialised() (hpcflow.sdk.persistence.pending.PendingChanges method) clear_set_js_metadata() (hpcflow.sdk.persistence.pending.PendingChanges method) clear_set_parameters() (hpcflow.sdk.persistence.pending.PendingChanges method) clear_update_loop_indices() (hpcflow.sdk.persistence.pending.PendingChanges method) clear_update_loop_num_iters() (hpcflow.sdk.persistence.pending.PendingChanges method) clear_update_param_sources() (hpcflow.sdk.persistence.pending.PendingChanges method) CLI_exception_wrapper_gen() (in module hpcflow.sdk.config.cli) CLI_logger (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) close() (hpcflow.sdk.persistence.store_resource.JSONFileStoreResource method) (hpcflow.sdk.persistence.store_resource.StoreResource method) (hpcflow.sdk.persistence.store_resource.ZarrAttrsStoreResource method) Command (class in hpcflow.app) (class in hpcflow.sdk.core.commands) command (hpcflow.app.Command attribute) (hpcflow.app.ExecutableInstance attribute) (hpcflow.sdk.core.commands.Command attribute) (hpcflow.sdk.core.environment.ExecutableInstance attribute) command_files (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) CommandFilesList (class in hpcflow.app) (class in hpcflow.sdk.core.object_list) commands (hpcflow.sdk.core.actions.ElementActionOLD attribute) commit_all() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_EAR_ends (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_EAR_ends() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_EAR_skips (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_EAR_skips() (hpcflow.sdk.persistence.pending.PendingChanges method)

commit_EAR_starts (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_EAR_starts() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_EAR_submission_indices (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_EAR_submission_indices() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_EARs (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_EARs() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_EARs_initialised (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_EARs_initialised() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_elem_IDs (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_elem_IDs() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_elem_iter_EAR_IDs (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_elem_iter_EAR_IDs() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_elem_iter_IDs (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_elem_iter_IDs() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_elem_iters (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_elem_iters() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_element_sets (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_element_sets() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_elements (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_elements() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_files (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_files() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_js_metadata (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_js_metadata() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_loop_indices (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_loop_indices() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_loop_num_iters (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_loop_num_iters() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_loops (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_loops() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_param_sources (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_param_sources() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_parameters (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_parameters() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_submission_parts (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_submission_parts() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_submissions (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_submissions() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_tasks (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_tasks() (hpcflow.sdk.persistence.pending.PendingChanges method) commit_template_components (hpcflow.sdk.persistence.pending.CommitResourceMap attribute) commit_template_components() (hpcflow.sdk.persistence.pending.PendingChanges method) CommitResourceMap (class in hpcflow.sdk.persistence.pending) compose_commands() (hpcflow.app.ElementActionRun method) (hpcflow.sdk.core.actions.ElementActionRun method) compose_jobscript() (hpcflow.app.Jobscript method) (hpcflow.sdk.submission.jobscript.Jobscript method) compose_source() (hpcflow.app.ElementActionRun method) (hpcflow.app.InputFileGenerator method) (hpcflow.app.OutputFileParser method) (hpcflow.sdk.core.actions.ElementActionRun method) (hpcflow.sdk.core.command_files.InputFileGenerator method) (hpcflow.sdk.core.command_files.OutputFileParser method) Config (class in hpcflow.sdk.config.config) config (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) config_logger (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) ConfigChangeFileUpdateError ConfigChangeInvalidError ConfigChangeInvalidJSONError ConfigChangePopIndexError ConfigChangeTypeInvalidError ConfigChangeValidationError ConfigDefaultValidationError ConfigError ConfigFile (class in hpcflow.sdk.config.config_file) ConfigFileInvocationIncompatibleError ConfigFileValidationError ConfigInvocationKeyNotFoundError ConfigItemAlreadyUnsetError ConfigItemCallbackError ConfigNonConfigurableError ConfigOptions (class in hpcflow.sdk.config.config) ConfigUnknownItemError ConfigUnknownOverrideError ConfigValidationError contents (hpcflow.app.InputFile property) (hpcflow.app.InputFileGeneratorSource property) (hpcflow.app.OutputFileParserSource property) (hpcflow.sdk.core.command_files.InputFile property) (hpcflow.sdk.core.command_files.InputFileGeneratorSource property) (hpcflow.sdk.core.command_files.OutputFileParserSource property) copy() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) copy_non_persistent() (hpcflow.app.ResourceSpec method) (hpcflow.sdk.core.parameters.ResourceSpec method) create (hpcflow.sdk.persistence.base.PersistentStoreFeatures attribute) creation_info (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) custom_warning_formatter() (in module hpcflow.sdk.config.cli)

D

d (hpcflow.sdk.core.test_utils.P1_parameter_cls attribute) data (hpcflow.sdk.persistence.base.StoreParameter attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreParameter attribute) data_idx (hpcflow.app.ElementActionRun property) (hpcflow.app.ElementIteration property) (hpcflow.app.ElementParameter attribute) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.core.element.ElementParameter attribute) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.base.StoreElementIter attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter attribute) data_idx_is_set (hpcflow.app.ElementParameter property) (hpcflow.sdk.core.element.ElementParameter property) decode() (hpcflow.sdk.persistence.base.StoreEAR class method) (hpcflow.sdk.persistence.base.StoreElement class method) (hpcflow.sdk.persistence.base.StoreElementIter class method) (hpcflow.sdk.persistence.base.StoreParameter class method) (hpcflow.sdk.persistence.base.StoreTask class method) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR class method) (hpcflow.sdk.persistence.zarr.ZarrStoreElement class method) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter class method) (hpcflow.sdk.persistence.zarr.ZarrStoreParameter class method) (hpcflow.sdk.persistence.zarr.ZarrStoreTask class method) DEFAULT (hpcflow.app.InputSourceType attribute) default (hpcflow.app.Parameters attribute) (hpcflow.sdk.core.task.Parameters attribute) default() (hpcflow.app.InputSource class method) (hpcflow.sdk.core.parameters.InputSource class method) DEFAULT_ARRAY_ITEM_VAR (hpcflow.app.SGEPosix attribute) (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.sge.SGEPosix attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute) DEFAULT_ARRAY_SWITCH (hpcflow.app.SGEPosix attribute) (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.sge.SGEPosix attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute) default_config (hpcflow.sdk.config.config.ConfigOptions attribute) DEFAULT_CWD_SWITCH (hpcflow.app.SGEPosix attribute) (hpcflow.sdk.submission.schedulers.sge.SGEPosix attribute) DEFAULT_DEL_CMD (hpcflow.app.SGEPosix attribute) (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.sge.SGEPosix attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute) default_directory (hpcflow.sdk.config.config.ConfigOptions attribute) DEFAULT_EXE (hpcflow.sdk.submission.shells.bash.Bash attribute) (hpcflow.sdk.submission.shells.bash.WSLBash attribute) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell attribute) DEFAULT_JS_CMD (hpcflow.app.SGEPosix attribute) (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.sge.SGEPosix attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute) DEFAULT_LOG_CONSOLE_LEVEL (hpcflow.sdk.log.AppLog attribute) DEFAULT_LOG_FILE_LEVEL (hpcflow.sdk.log.AppLog attribute) DEFAULT_SHEBANG_ARGS (hpcflow.app.DirectPosix attribute) (hpcflow.app.DirectWindows attribute) (hpcflow.app.SGEPosix attribute) (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.direct.DirectPosix attribute) (hpcflow.sdk.submission.schedulers.direct.DirectScheduler attribute) (hpcflow.sdk.submission.schedulers.direct.DirectWindows attribute) (hpcflow.sdk.submission.schedulers.NullScheduler attribute) (hpcflow.sdk.submission.schedulers.Scheduler attribute) (hpcflow.sdk.submission.schedulers.sge.SGEPosix attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute) DEFAULT_SHELL_ARGS (hpcflow.app.DirectPosix attribute) (hpcflow.app.DirectWindows attribute) (hpcflow.app.SGEPosix attribute) (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.direct.DirectPosix attribute) (hpcflow.sdk.submission.schedulers.direct.DirectScheduler attribute) (hpcflow.sdk.submission.schedulers.direct.DirectWindows attribute) (hpcflow.sdk.submission.schedulers.NullScheduler attribute) (hpcflow.sdk.submission.schedulers.Scheduler attribute) (hpcflow.sdk.submission.schedulers.sge.SGEPosix attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute)

DEFAULT_SHELL_EXECUTABLE (hpcflow.app.DirectPosix attribute) (hpcflow.app.DirectWindows attribute) (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.direct.DirectPosix attribute) (hpcflow.sdk.submission.schedulers.direct.DirectWindows attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute) DEFAULT_SHOW_CMD (hpcflow.app.SGEPosix attribute) (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.sge.SGEPosix attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute) DEFAULT_SUBMIT_CMD (hpcflow.app.SGEPosix attribute) (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.sge.SGEPosix attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute) default_value (hpcflow.app.SchemaInput property) (hpcflow.sdk.core.parameters.SchemaInput property) DEFAULT_WSL_EXE (hpcflow.sdk.submission.shells.bash.WSLBash attribute) defined_input_types (hpcflow.app.ElementSet property) (hpcflow.app.Task property) (hpcflow.sdk.core.task.ElementSet property) (hpcflow.sdk.core.task.Task property) delete() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) delete_no_confirm() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) demo_task_1_generate_t1_infile_1() (in module hpcflow.sdk.demo.scripts.demo_task_1_generate_t1_infile_1) demo_task_1_generate_t1_infile_2() (in module hpcflow.sdk.demo.scripts.demo_task_1_generate_t1_infile_2) demo_task_1_parse_p3() (in module hpcflow.sdk.demo.scripts.demo_task_1_parse_p3) dependencies (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) dict_key_attr (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) dict_val_attr (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) dir_diff (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ElementActionRun property) dir_name (hpcflow.app.Element property) (hpcflow.app.Task property) (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.task.Task property) (hpcflow.sdk.core.task.WorkflowTask property) direct_stderr_file_name (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) direct_stderr_path (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) direct_stdout_file_name (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) direct_stdout_path (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) direct_win_pid_file_name (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) direct_win_pid_file_path (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) directory_env_var (hpcflow.sdk.config.config.ConfigOptions attribute) DirectPosix (class in hpcflow.app) (class in hpcflow.sdk.submission.schedulers.direct) DirectScheduler (class in hpcflow.sdk.submission.schedulers.direct) DirectWindows (class in hpcflow.app) (class in hpcflow.sdk.submission.schedulers.direct) DISTRIBUTED (hpcflow.sdk.core.parameters.ParallelMode attribute) DotAccessObjectList (class in hpcflow.sdk.core.object_list) downstream_tasks (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.task.WorkflowTask property) DuplicateExecutableError

E

EAR_ID hpcflow-internal-workflow-PATH-get-ear-skipped command line option hpcflow-internal-workflow-PATH-save-parameter command line option hpcflow-internal-workflow-PATH-set-ear-end command line option hpcflow-internal-workflow-PATH-set-ear-skip command line option hpcflow-internal-workflow-PATH-set-ear-start command line option hpcflow-internal-workflow-PATH-write-commands command line option EAR_ID (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) EAR_ID_file_name (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) EAR_ID_file_path (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) EAR_IDs (hpcflow.app.ElementIteration property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.persistence.base.StoreElementIter attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter attribute) EAR_IDs_flat (hpcflow.app.ElementIteration property) (hpcflow.sdk.core.element.ElementIteration property) EAR_parallelism (hpcflow.sdk.persistence.base.PersistentStoreFeatures attribute) EARs_by_elements (hpcflow.app.Submission property) (hpcflow.sdk.submission.submission.Submission property) EARs_initialised (hpcflow.app.ElementIteration property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.persistence.base.StoreElementIter attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter attribute) EARStatus (class in hpcflow.sdk.core.actions) edit (hpcflow.sdk.persistence.base.PersistentStoreFeatures attribute) elem_iter_ID (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) elem_iter_IDs (hpcflow.app.ElementSet property) (hpcflow.sdk.core.task.ElementSet property) Element (class in hpcflow.app) (class in hpcflow.sdk.core.element) element (hpcflow.app.ElementAction property) (hpcflow.app.ElementActionRun property) (hpcflow.app.ElementIteration property) (hpcflow.app.ElementParameter attribute) (hpcflow.sdk.core.actions.ElementAction property) (hpcflow.sdk.core.actions.ElementActionOLD attribute) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.core.element.ElementParameter attribute) element_action (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ElementActionRun property) element_ID (hpcflow.sdk.persistence.base.StoreElementIter attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter attribute) element_IDs (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.task.WorkflowTask property) (hpcflow.sdk.persistence.base.StoreTask attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreTask attribute) element_iteration (hpcflow.app.ElementAction property) (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ElementAction property) (hpcflow.sdk.core.actions.ElementActionRun property) element_iterations (hpcflow.app.ElementSet property) (hpcflow.sdk.core.task.ElementSet property) element_local_idx_range (hpcflow.app.ElementSet property) (hpcflow.sdk.core.task.ElementSet property) element_run_dir_file_name (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) element_run_dir_file_path (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) element_set (hpcflow.app.Element property) (hpcflow.app.ElementPropagation property) (hpcflow.app.ResourceList property) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.object_list.ResourceList property) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.task.ElementPropagation property) element_set_idx (hpcflow.app.Element property) (hpcflow.sdk.core.element.Element property) element_sets (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) ElementAction (class in hpcflow.app) (class in hpcflow.sdk.core.actions) ElementActionOLD (class in hpcflow.sdk.core.actions) ElementActionRun (class in hpcflow.app) (class in hpcflow.sdk.core.actions) ElementFilter (class in hpcflow.app) (class in hpcflow.sdk.core.element) ElementGroup (class in hpcflow.app) (class in hpcflow.sdk.core.element) ElementInputFiles (class in hpcflow.app) (class in hpcflow.sdk.core.element) ElementInputs (class in hpcflow.app) (class in hpcflow.sdk.core.element) ElementIteration (class in hpcflow.app) (class in hpcflow.sdk.core.element) ElementOutputFiles (class in hpcflow.app) (class in hpcflow.sdk.core.element) ElementOutputs (class in hpcflow.app) (class in hpcflow.sdk.core.element) ElementParameter (class in hpcflow.app) (class in hpcflow.sdk.core.element)

ElementPropagation (class in hpcflow.app) (class in hpcflow.sdk.core.task) ElementRepeats (class in hpcflow.app) (class in hpcflow.sdk.core.element) ElementResources (class in hpcflow.app) (class in hpcflow.sdk.core.element) Elements (class in hpcflow.app) (class in hpcflow.sdk.core.task) elements (hpcflow.app.ElementSet property) (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.task.ElementSet property) (hpcflow.sdk.core.task.WorkflowTask property) elements() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) ElementSet (class in hpcflow.app) (class in hpcflow.sdk.core.task) encode() (hpcflow.sdk.persistence.base.StoreEAR method) (hpcflow.sdk.persistence.base.StoreElement method) (hpcflow.sdk.persistence.base.StoreElementIter method) (hpcflow.sdk.persistence.base.StoreParameter method) (hpcflow.sdk.persistence.base.StoreTask method) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR method) (hpcflow.sdk.persistence.zarr.ZarrStoreElement method) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter method) (hpcflow.sdk.persistence.zarr.ZarrStoreParameter method) (hpcflow.sdk.persistence.zarr.ZarrStoreTask method) end_time (hpcflow.app.ElementActionRun property) (hpcflow.app.Jobscript property) (hpcflow.app.Submission property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.submission.Submission property) ensure_element_sets() (hpcflow.app.ElementSet class method) (hpcflow.sdk.core.task.ElementSet class method) ensure_in() (in module hpcflow.sdk.core.utils) ensure_input_sources() (hpcflow.app.WorkflowTask method) (hpcflow.sdk.core.task.WorkflowTask method) Environment (class in hpcflow.app) (class in hpcflow.sdk.core.environment) environment (hpcflow.app.ActionEnvironment attribute) (hpcflow.app.Executable property) (hpcflow.app.ExecutablesList attribute) (hpcflow.app.InputFileGenerator attribute) (hpcflow.app.OutputFileParser attribute) (hpcflow.sdk.core.actions.ActionEnvironment attribute) (hpcflow.sdk.core.command_files.InputFileGenerator attribute) (hpcflow.sdk.core.command_files.OutputFileParser attribute) (hpcflow.sdk.core.environment.Executable property) (hpcflow.sdk.core.object_list.ExecutablesList attribute) EnvironmentsList (class in hpcflow.app) (class in hpcflow.sdk.core.object_list) EnvironmentSpecValidationError envs (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) error (hpcflow.sdk.core.actions.EARStatus attribute) errored (hpcflow.sdk.submission.jobscript_info.JobscriptElementState attribute) es_idx (hpcflow.sdk.persistence.base.StoreElement attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElement attribute) Executable (class in hpcflow.app) (class in hpcflow.sdk.core.environment) executable (hpcflow.app.Command attribute) (hpcflow.sdk.core.commands.Command attribute) (hpcflow.sdk.submission.shells.base.Shell property) (hpcflow.sdk.submission.shells.bash.Bash property) (hpcflow.sdk.submission.shells.bash.WSLBash property) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell property) ExecutableInstance (class in hpcflow.app) (class in hpcflow.sdk.core.environment) ExecutablesList (class in hpcflow.app) (class in hpcflow.sdk.core.object_list) execute() (hpcflow.sdk.core.actions.ElementActionOLD method) execution_path (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) exists_in_schedulers() (in module hpcflow.sdk.config.callbacks) EXIT_CODE hpcflow-internal-workflow-PATH-set-ear-end command line option exit_code (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) expand() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) EXPLICIT (hpcflow.app.ParameterPropagationMode attribute) ext (hpcflow.app.FileNameSpec property) (hpcflow.app.FileSpec property) (hpcflow.sdk.core.command_files.FileNameSpec property) (hpcflow.sdk.core.command_files.FileSpec property) extension (hpcflow.app.InputFile property) (hpcflow.app.InputFileGeneratorSource property) (hpcflow.app.OutputFileParserSource property) (hpcflow.sdk.core.command_files.InputFile property) (hpcflow.sdk.core.command_files.InputFileGeneratorSource property) (hpcflow.sdk.core.command_files.OutputFileParserSource property) extra_schemas (hpcflow.sdk.config.config.ConfigOptions attribute) ExtraInputs

F

file (hpcflow.sdk.persistence.base.StoreParameter attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreParameter attribute) file_name (hpcflow.app.FileNameExt attribute) (hpcflow.app.FileNameStem attribute) (hpcflow.sdk.core.command_files.FileNameExt attribute) (hpcflow.sdk.core.command_files.FileNameStem attribute) FileNameExt (class in hpcflow.app) (class in hpcflow.sdk.core.command_files) FileNameSpec (class in hpcflow.app) (class in hpcflow.sdk.core.command_files) FileNameStem (class in hpcflow.app) (class in hpcflow.sdk.core.command_files) FileSpec (class in hpcflow.app) (class in hpcflow.sdk.core.command_files) FileSpecValidationError filter_instances() (hpcflow.app.Executable method) (hpcflow.sdk.core.environment.Executable method) finished (hpcflow.sdk.submission.jobscript_info.JobscriptElementState attribute) flatten() (in module hpcflow.sdk.core.utils) format_array_request() (hpcflow.app.SGEPosix method) (hpcflow.app.SlurmPosix method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix method) format_core_request_lines() (hpcflow.app.SGEPosix method) (hpcflow.app.SlurmPosix method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix method) format_options() (hpcflow.app.SGEPosix method) (hpcflow.app.SlurmPosix method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix method) format_save_parameter() (hpcflow.sdk.submission.shells.bash.Bash method) (hpcflow.sdk.submission.shells.bash.WSLBash method) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell method) format_std_stream_file_option_lines() (hpcflow.app.SGEPosix method) (hpcflow.app.SlurmPosix method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix method) format_stream_assignment() (hpcflow.sdk.submission.shells.bash.Bash method) (hpcflow.sdk.submission.shells.bash.WSLBash method) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell method) format_switch() (hpcflow.app.SGEPosix method) (hpcflow.app.SlurmPosix method) (hpcflow.sdk.submission.schedulers.Scheduler method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix method) from_data() (hpcflow.sdk.core.test_utils.P1_parameter_cls class method) from_file() (hpcflow.app.Workflow class method) (hpcflow.app.WorkflowTemplate class method) (hpcflow.sdk.core.workflow.Workflow class method) (hpcflow.sdk.core.workflow.WorkflowTemplate class method) from_JSON_file() (hpcflow.app.Workflow class method) (hpcflow.app.WorkflowTemplate class method) (hpcflow.sdk.core.workflow.Workflow class method) (hpcflow.sdk.core.workflow.WorkflowTemplate class method) from_json_like() (hpcflow.app.Action class method) (hpcflow.app.ActionEnvironment class method) (hpcflow.app.ActionRule class method) (hpcflow.app.ActionScope class method) (hpcflow.app.Command class method) (hpcflow.app.CommandFilesList class method) (hpcflow.app.ElementFilter class method) (hpcflow.app.ElementGroup class method) (hpcflow.app.ElementResources class method) (hpcflow.app.ElementSet class method) (hpcflow.app.Environment class method) (hpcflow.app.EnvironmentsList class method) (hpcflow.app.Executable class method) (hpcflow.app.ExecutableInstance class method) (hpcflow.app.ExecutablesList class method) (hpcflow.app.FileNameExt class method) (hpcflow.app.FileNameSpec class method) (hpcflow.app.FileNameStem class method) (hpcflow.app.FileSpec class method) (hpcflow.app.GroupList class method) (hpcflow.app.InputFile class method) (hpcflow.app.InputFileGenerator class method) (hpcflow.app.InputFileGeneratorSource class method) (hpcflow.app.InputSource class method) (hpcflow.app.InputValue class method) (hpcflow.app.Jobscript class method) (hpcflow.app.Loop class method) (hpcflow.app.NumCores class method) (hpcflow.app.OutputFileParser class method) (hpcflow.app.OutputFileParserSource class method) (hpcflow.app.OutputLabel class method) (hpcflow.app.Parameter class method) (hpcflow.app.ParameterPath class method) (hpcflow.app.ParametersList class method) (hpcflow.app.ResourceList class method) (hpcflow.app.ResourceSpec class method) (hpcflow.app.SchemaInput class method) (hpcflow.app.SchemaOutput class method) (hpcflow.app.SchemaParameter class method) (hpcflow.app.Submission class method) (hpcflow.app.Task class method) (hpcflow.app.TaskList class method) (hpcflow.app.TaskObjective class method) (hpcflow.app.TaskSchema class method) (hpcflow.app.TaskSchemasList class method) (hpcflow.app.TaskTemplateList class method) (hpcflow.app.ValuePerturbation class method) (hpcflow.app.ValueSequence class method) (hpcflow.app.WorkflowLoopList class method) (hpcflow.app.WorkflowTaskList class method) (hpcflow.app.WorkflowTemplate class method) (hpcflow.sdk.core.actions.Action class method) (hpcflow.sdk.core.actions.ActionEnvironment class method) (hpcflow.sdk.core.actions.ActionRule class method) (hpcflow.sdk.core.actions.ActionScope class method) (hpcflow.sdk.core.command_files.FileNameExt class method) (hpcflow.sdk.core.command_files.FileNameSpec class method) (hpcflow.sdk.core.command_files.FileNameStem class method) (hpcflow.sdk.core.command_files.FileSpec class method) (hpcflow.sdk.core.command_files.InputFile class method) (hpcflow.sdk.core.command_files.InputFileGenerator class method) (hpcflow.sdk.core.command_files.InputFileGeneratorSource class method) (hpcflow.sdk.core.command_files.OutputFileParser class method) (hpcflow.sdk.core.command_files.OutputFileParserSource class method) (hpcflow.sdk.core.commands.Command class method) (hpcflow.sdk.core.element.ElementFilter class method) (hpcflow.sdk.core.element.ElementGroup class method) (hpcflow.sdk.core.element.ElementResources class method) (hpcflow.sdk.core.environment.Environment class method) (hpcflow.sdk.core.environment.Executable class method) (hpcflow.sdk.core.environment.ExecutableInstance class method) (hpcflow.sdk.core.environment.NumCores class method) (hpcflow.sdk.core.json_like.BaseJSONLike class method) (hpcflow.sdk.core.json_like.JSONLike class method) (hpcflow.sdk.core.loop.Loop class method) (hpcflow.sdk.core.object_list.AppDataList class method) (hpcflow.sdk.core.object_list.CommandFilesList class method) (hpcflow.sdk.core.object_list.DotAccessObjectList class method) (hpcflow.sdk.core.object_list.EnvironmentsList class method) (hpcflow.sdk.core.object_list.ExecutablesList class method) (hpcflow.sdk.core.object_list.GroupList class method) (hpcflow.sdk.core.object_list.ObjectList class method) (hpcflow.sdk.core.object_list.ParametersList class method) (hpcflow.sdk.core.object_list.ResourceList class method) (hpcflow.sdk.core.object_list.TaskList class method) (hpcflow.sdk.core.object_list.TaskSchemasList class method) (hpcflow.sdk.core.object_list.TaskTemplateList class method) (hpcflow.sdk.core.object_list.WorkflowLoopList class method) (hpcflow.sdk.core.object_list.WorkflowTaskList class method) (hpcflow.sdk.core.parameters.AbstractInputValue class method) (hpcflow.sdk.core.parameters.InputSource class method) (hpcflow.sdk.core.parameters.InputValue class method) (hpcflow.sdk.core.parameters.Parameter class method) (hpcflow.sdk.core.parameters.ParameterPath class method) (hpcflow.sdk.core.parameters.ResourceSpec class method) (hpcflow.sdk.core.parameters.SchemaInput class method) (hpcflow.sdk.core.parameters.SchemaOutput class method) (hpcflow.sdk.core.parameters.SchemaParameter class method) (hpcflow.sdk.core.parameters.ValuePerturbation class method) (hpcflow.sdk.core.parameters.ValueSequence class method) (hpcflow.sdk.core.task.ElementSet class method) (hpcflow.sdk.core.task.OutputLabel class method) (hpcflow.sdk.core.task.Task class method) (hpcflow.sdk.core.task_schema.TaskObjective class method) (hpcflow.sdk.core.task_schema.TaskSchema class method) (hpcflow.sdk.core.workflow.WorkflowTemplate class method) (hpcflow.sdk.submission.jobscript.Jobscript class method) (hpcflow.sdk.submission.submission.Submission class method)

from_JSON_string() (hpcflow.app.Workflow class method) (hpcflow.app.WorkflowTemplate class method) (hpcflow.sdk.core.workflow.Workflow class method) (hpcflow.sdk.core.workflow.WorkflowTemplate class method) from_linear_space() (hpcflow.app.ValueSequence class method) (hpcflow.sdk.core.parameters.ValueSequence class method) from_range() (hpcflow.app.ValueSequence class method) (hpcflow.sdk.core.parameters.ValueSequence class method) from_spec() (hpcflow.app.ElementFilter class method) (hpcflow.app.ExecutableInstance class method) (hpcflow.app.ValuePerturbation class method) (hpcflow.sdk.core.element.ElementFilter class method) (hpcflow.sdk.core.environment.ExecutableInstance class method) (hpcflow.sdk.core.parameters.ValuePerturbation class method) from_string() (hpcflow.app.InputSource class method) (hpcflow.sdk.core.parameters.InputSource class method) from_template() (hpcflow.app.Workflow class method) (hpcflow.sdk.core.workflow.Workflow class method) from_template_data() (hpcflow.app.Workflow class method) (hpcflow.sdk.core.workflow.Workflow class method) from_YAML_file() (hpcflow.app.Workflow class method) (hpcflow.app.WorkflowTemplate class method) (hpcflow.sdk.core.workflow.Workflow class method) (hpcflow.sdk.core.workflow.WorkflowTemplate class method) from_YAML_string() (hpcflow.app.Workflow class method) (hpcflow.app.WorkflowTemplate class method) (hpcflow.sdk.core.workflow.Workflow class method) (hpcflow.sdk.core.workflow.WorkflowTemplate class method) from_zarr() (hpcflow.sdk.core.zarr_io.ZarrEncodable class method) FromSpecMissingObjectError fs_path (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property)

G

generate_data_index() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) generate_EAR_resource_map() (in module hpcflow.sdk.submission.jobscript) generate_new_elements() (hpcflow.app.WorkflowTask method) (hpcflow.sdk.core.task.WorkflowTask method) generate_t1_file_01() (in module hpcflow.sdk.demo.scripts.generate_t1_file_01) get() (hpcflow.app.CommandFilesList method) (hpcflow.app.Element method) (hpcflow.app.ElementAction method) (hpcflow.app.ElementActionRun method) (hpcflow.app.ElementIteration method) (hpcflow.app.EnvironmentsList method) (hpcflow.app.ExecutablesList method) (hpcflow.app.GroupList method) (hpcflow.app.ParametersList method) (hpcflow.app.ResourceList method) (hpcflow.app.TaskList method) (hpcflow.app.TaskSchemasList method) (hpcflow.app.TaskTemplateList method) (hpcflow.app.WorkflowLoopList method) (hpcflow.app.WorkflowTask method) (hpcflow.app.WorkflowTaskList method) (hpcflow.sdk.config.config.Config method) (hpcflow.sdk.core.actions.ElementAction method) (hpcflow.sdk.core.actions.ElementActionRun method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) (hpcflow.sdk.core.object_list.AppDataList method) (hpcflow.sdk.core.object_list.CommandFilesList method) (hpcflow.sdk.core.object_list.DotAccessObjectList method) (hpcflow.sdk.core.object_list.EnvironmentsList method) (hpcflow.sdk.core.object_list.ExecutablesList method) (hpcflow.sdk.core.object_list.GroupList method) (hpcflow.sdk.core.object_list.ObjectList method) (hpcflow.sdk.core.object_list.ParametersList method) (hpcflow.sdk.core.object_list.ResourceList method) (hpcflow.sdk.core.object_list.TaskList method) (hpcflow.sdk.core.object_list.TaskSchemasList method) (hpcflow.sdk.core.object_list.TaskTemplateList method) (hpcflow.sdk.core.object_list.WorkflowLoopList method) (hpcflow.sdk.core.object_list.WorkflowTaskList method) (hpcflow.sdk.core.task.WorkflowTask method) get_action_rule() (hpcflow.app.InputFileGenerator method) (hpcflow.sdk.core.command_files.InputFileGenerator method) get_activate_env_command() (hpcflow.sdk.runtime.RunTimeInfo method) get_active_jobscripts() (hpcflow.app.Submission method) (hpcflow.sdk.submission.submission.Submission method) get_active_states() (hpcflow.app.Jobscript method) (hpcflow.sdk.submission.jobscript.Jobscript method) get_all() (hpcflow.app.CommandFilesList method) (hpcflow.app.EnvironmentsList method) (hpcflow.app.ExecutablesList method) (hpcflow.app.GroupList method) (hpcflow.app.ParametersList method) (hpcflow.app.ResourceList method) (hpcflow.app.TaskList method) (hpcflow.app.TaskSchemasList method) (hpcflow.app.TaskTemplateList method) (hpcflow.app.WorkflowLoopList method) (hpcflow.app.WorkflowTaskList method) (hpcflow.sdk.config.config.Config method) (hpcflow.sdk.core.object_list.AppDataList method) (hpcflow.sdk.core.object_list.CommandFilesList method) (hpcflow.sdk.core.object_list.DotAccessObjectList method) (hpcflow.sdk.core.object_list.EnvironmentsList method) (hpcflow.sdk.core.object_list.ExecutablesList method) (hpcflow.sdk.core.object_list.GroupList method) (hpcflow.sdk.core.object_list.ObjectList method) (hpcflow.sdk.core.object_list.ParametersList method) (hpcflow.sdk.core.object_list.ResourceList method) (hpcflow.sdk.core.object_list.TaskList method) (hpcflow.sdk.core.object_list.TaskSchemasList method) (hpcflow.sdk.core.object_list.TaskTemplateList method) (hpcflow.sdk.core.object_list.WorkflowLoopList method) (hpcflow.sdk.core.object_list.WorkflowTaskList method) get_all_EARs() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_all_element_iterations() (hpcflow.app.Workflow method) (hpcflow.app.WorkflowTask method) (hpcflow.sdk.core.task.WorkflowTask method) (hpcflow.sdk.core.workflow.Workflow method) get_all_elements() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_all_parameter_data() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_all_parameters() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_app_attribute() (in module hpcflow.sdk.app) get_app_data_script_path() (hpcflow.app.Action class method) (hpcflow.sdk.core.actions.Action class method) get_app_module_all() (in module hpcflow.sdk.app) get_app_module_dir() (in module hpcflow.sdk.app) get_available_task_input_sources() (hpcflow.app.Task method) (hpcflow.sdk.core.task.Task method) get_by_key() (hpcflow.app.TaskSchema class method) (hpcflow.sdk.core.task_schema.TaskSchema class method) get_child_loops() (hpcflow.app.WorkflowLoop method) (hpcflow.sdk.core.loop.WorkflowLoop method) get_command_input_file_labels() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_command_input_types() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_command_line() (hpcflow.app.Command method) (hpcflow.sdk.core.commands.Command method) get_command_output_types() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_commands_action_env() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_commands_file_name() (hpcflow.app.Jobscript method) (hpcflow.sdk.submission.jobscript.Jobscript method) get_config_CLI() (in module hpcflow.sdk.config.cli) get_config_file_path() (hpcflow.sdk.config.config_file.ConfigFile static method) get_config_item() (hpcflow.sdk.config.config_file.ConfigFile method) get_config_path() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) get_configurable() (hpcflow.sdk.config.config.Config method) get_creation_info() (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_data_idx() (hpcflow.app.Element method) (hpcflow.app.ElementAction method) (hpcflow.app.ElementActionRun method) (hpcflow.app.ElementIteration method) (hpcflow.sdk.core.actions.ElementAction method) (hpcflow.sdk.core.actions.ElementActionRun method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) get_deactivate_env_command() (hpcflow.sdk.runtime.RunTimeInfo method) get_default_os_name() (hpcflow.app.ElementResources static method) (hpcflow.sdk.core.element.ElementResources static method) get_default_scheduler() (hpcflow.app.ElementResources class method) (hpcflow.sdk.core.element.ElementResources class method) get_default_shell() (hpcflow.app.ElementResources class method) (hpcflow.sdk.core.element.ElementResources class method) get_defined_parameter_types() (hpcflow.app.ElementSet method) (hpcflow.sdk.core.task.ElementSet method) get_defined_sub_parameter_types() (hpcflow.app.ElementSet method) (hpcflow.sdk.core.task.ElementSet method) get_demo_software_CLI() (in module hpcflow.sdk.demo.cli) get_dependent_EARs() (hpcflow.app.Element method) (hpcflow.app.ElementActionRun method) (hpcflow.app.ElementIteration method) (hpcflow.sdk.core.actions.ElementActionRun method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) get_dependent_element_iterations() (hpcflow.app.Element method) (hpcflow.app.ElementIteration method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) get_dependent_elements() (hpcflow.app.Element method) (hpcflow.app.ElementIteration method) (hpcflow.app.WorkflowTask method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) (hpcflow.sdk.core.task.WorkflowTask method) get_dependent_elements_recursively() (hpcflow.app.Element method) (hpcflow.sdk.core.element.Element method) get_dependent_tasks() (hpcflow.app.Element method) (hpcflow.app.ElementIteration method) (hpcflow.app.WorkflowTask method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) (hpcflow.sdk.core.task.WorkflowTask method) get_dir_name() (hpcflow.app.WorkflowTask method) (hpcflow.sdk.core.task.WorkflowTask method) get_direct_submit_command() (hpcflow.sdk.submission.shells.base.Shell method) (hpcflow.sdk.submission.shells.bash.Bash method) (hpcflow.sdk.submission.shells.bash.WSLBash method) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell method) get_duplicate_items() (in module hpcflow.sdk.core.utils) get_EAR_dependencies() (hpcflow.app.Element method) (hpcflow.app.ElementActionRun method) (hpcflow.app.ElementIteration method) (hpcflow.sdk.core.actions.ElementActionRun method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) get_EAR_IDs_of_tasks() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_EAR_skipped() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_EARs() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_EARs_from_IDs() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_EARs_of_tasks() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_element_dependencies() (hpcflow.app.Element method) (hpcflow.app.ElementIteration method) (hpcflow.app.WorkflowTask method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) (hpcflow.sdk.core.task.WorkflowTask method) get_element_IDs_from_EAR_IDs() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_element_iteration_dependencies() (hpcflow.app.Element method) (hpcflow.app.ElementIteration method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) get_element_iteration_IDs_from_EAR_IDs() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_element_iterations() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_element_iterations_from_IDs() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_element_iterations_of_tasks() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_elements() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_elements_from_IDs() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_end_time() (hpcflow.app.Submission method) (hpcflow.sdk.submission.submission.Submission method) get_enum_by_name_or_val() (in module hpcflow.sdk.core.utils) get_environment() (hpcflow.app.ElementActionRun method) (hpcflow.sdk.core.actions.ElementActionOLD method) (hpcflow.sdk.core.actions.ElementActionRun method) get_fs_path() (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_helper_CLI() (in module hpcflow.sdk.helper.cli) get_helper_log_path() (in module hpcflow.sdk.helper.helper) get_helper_logger() (in module hpcflow.sdk.helper.helper) get_helper_PID() (in module hpcflow.sdk.helper.helper) get_helper_uptime() (in module hpcflow.sdk.helper.helper) get_helper_watch_list() (in module hpcflow.sdk.helper.helper) get_IFG_input_values() (hpcflow.app.ElementActionRun method) (hpcflow.sdk.core.actions.ElementActionRun method) get_in_container() (in module hpcflow.sdk.core.utils) get_info() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) get_input_dependencies() (hpcflow.app.Element method) (hpcflow.app.ElementActionRun method) (hpcflow.app.ElementIteration method) (hpcflow.sdk.core.actions.ElementActionRun method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) get_input_file_generator_action_env() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_input_file_labels() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_input_statuses() (hpcflow.app.Task method) (hpcflow.sdk.core.task.Task method) get_input_types() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_input_values() (hpcflow.app.ElementActionRun method) (hpcflow.sdk.core.actions.ElementActionRun method) get_instance() (hpcflow.sdk.app.Singleton method) get_item_repeat_index() (in module hpcflow.sdk.core.utils)

get_iteration_task_pathway() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_job_state_info() (hpcflow.app.DirectPosix method) (hpcflow.app.DirectWindows method) (hpcflow.app.SGEPosix method) (hpcflow.app.SlurmPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectScheduler method) (hpcflow.sdk.submission.schedulers.direct.DirectWindows method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix method) get_job_statuses() (hpcflow.app.SGEPosix method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) get_jobscript_hash() (hpcflow.app.ElementResources method) (hpcflow.sdk.core.element.ElementResources method) get_key() (hpcflow.app.TaskSchema method) (hpcflow.sdk.core.task_schema.TaskSchema method) get_known_submissions() (in module hpcflow.app) get_locally_defined_inputs() (hpcflow.app.ElementSet method) (hpcflow.sdk.core.task.ElementSet method) get_loops() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_loops_by_IDs() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_md5_hash() (in module hpcflow.sdk.core.utils) get_nested_indices() (in module hpcflow.sdk.core.utils) get_non_running_submitted_states() (hpcflow.sdk.core.actions.EARStatus class method) get_OFP_inputs() (hpcflow.app.ElementActionRun method) (hpcflow.sdk.core.actions.ElementActionRun method) get_OFP_output_files() (hpcflow.app.ElementActionRun method) (hpcflow.sdk.core.actions.ElementActionRun method) get_OFP_outputs() (hpcflow.app.ElementActionRun method) (hpcflow.sdk.core.actions.ElementActionRun method) get_OS_info() (in module hpcflow.app) (in module hpcflow.sdk.submission.shells.os_version) get_OS_info_POSIX() (in module hpcflow.sdk.submission.shells.os_version) get_OS_info_windows() (in module hpcflow.sdk.submission.shells.os_version) get_OS_supported_schedulers() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) get_output_file_labels() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_output_file_parser_action_env() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_output_types() (hpcflow.app.Action method) (hpcflow.app.Command method) (hpcflow.sdk.core.actions.Action method) (hpcflow.sdk.core.commands.Command method) get_param_dump_file_path_JSON() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_param_dump_file_stem() (hpcflow.app.Action static method) (hpcflow.sdk.core.actions.Action static method) get_param_load_file_path_HDF5() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_param_load_file_path_JSON() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_param_load_file_stem() (hpcflow.app.Action static method) (hpcflow.sdk.core.actions.Action static method) get_param_provided_element_sets() (hpcflow.app.Task method) (hpcflow.sdk.core.task.Task method) get_parameter() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_parameter_data() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_parameter_dependence() (hpcflow.app.Action method) (hpcflow.app.TaskSchema method) (hpcflow.sdk.core.actions.Action method) (hpcflow.sdk.core.task_schema.TaskSchema method) get_parameter_names() (hpcflow.app.ElementAction method) (hpcflow.app.ElementActionRun method) (hpcflow.app.ElementIteration method) (hpcflow.sdk.core.actions.ElementAction method) (hpcflow.sdk.core.actions.ElementActionRun method) (hpcflow.sdk.core.element.ElementIteration method) get_parameter_set_statuses() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_parameter_source() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_parameter_sources() (hpcflow.app.Element method) (hpcflow.app.ElementAction method) (hpcflow.app.ElementActionRun method) (hpcflow.app.ElementIteration method) (hpcflow.app.Workflow method) (hpcflow.sdk.core.actions.ElementAction method) (hpcflow.sdk.core.actions.ElementActionRun method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_parameter_task_schema_map() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) get_parameters() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_parent_loops() (hpcflow.app.WorkflowLoop method) (hpcflow.sdk.core.loop.WorkflowLoop method) get_PID_file_path() (in module hpcflow.sdk.helper.helper) get_possible_scopes() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_precise_scope() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_process_stamp() (in module hpcflow.sdk.core.utils) get_relative_path() (in module hpcflow.sdk.core.utils) get_resolved_action_env() (hpcflow.app.Action method) (hpcflow.sdk.core.actions.Action method) get_resources() (hpcflow.app.ElementActionRun method) (hpcflow.app.ElementIteration method) (hpcflow.sdk.core.actions.ElementActionRun method) (hpcflow.sdk.core.element.ElementIteration method) get_resources_obj() (hpcflow.app.ElementIteration method) (hpcflow.sdk.core.element.ElementIteration method) get_schema() (in module hpcflow.sdk.core.validation) get_schema_action() (hpcflow.app.Task method) (hpcflow.sdk.core.task.Task method) get_scopes() (hpcflow.app.ResourceList method) (hpcflow.sdk.core.object_list.ResourceList method) get_script_name() (hpcflow.app.Action class method) (hpcflow.sdk.core.actions.Action class method) get_SDK_logger() (in module hpcflow.sdk) get_sequence_by_path() (hpcflow.app.ElementSet method) (hpcflow.sdk.core.task.ElementSet method) get_sequence_from_path() (hpcflow.app.ElementSet method) (hpcflow.sdk.core.task.ElementSet method) get_sequence_value() (hpcflow.app.Element method) (hpcflow.sdk.core.element.Element method) get_shell() (in module hpcflow.sdk.submission.shells) get_shell_info() (in module hpcflow.app) get_size() (hpcflow.app.ElementParameter method) (hpcflow.sdk.core.element.ElementParameter method) get_start_time() (hpcflow.app.Submission method) (hpcflow.sdk.submission.submission.Submission method) get_store_EARs() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_store_element_iterations() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_store_elements() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_store_tasks() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_submissions() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_submissions_by_ID() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_submit_command() (hpcflow.app.DirectPosix method) (hpcflow.app.DirectWindows method) (hpcflow.app.SGEPosix method) (hpcflow.app.SlurmPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectScheduler method) (hpcflow.sdk.submission.schedulers.direct.DirectWindows method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix method) get_supported_shells() (in module hpcflow.sdk.submission.shells) get_task() (hpcflow.app.InputSource method) (hpcflow.sdk.core.parameters.InputSource method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_task_dependencies() (hpcflow.app.Element method) (hpcflow.app.ElementIteration method) (hpcflow.app.ElementSet method) (hpcflow.app.WorkflowTask method) (hpcflow.sdk.core.element.Element method) (hpcflow.sdk.core.element.ElementIteration method) (hpcflow.sdk.core.task.ElementSet method) (hpcflow.sdk.core.task.WorkflowTask method) get_task_elements() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_task_IDs_from_element_IDs() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) get_task_loop_idx_array() (hpcflow.app.Jobscript method) (hpcflow.sdk.submission.jobscript.Jobscript method) get_task_unique_names() (hpcflow.app.Task static method) (hpcflow.app.Workflow method) (hpcflow.sdk.core.task.Task static method) (hpcflow.sdk.core.workflow.Workflow method) get_tasks() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_tasks_by_IDs() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_template() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_template_components() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_template_resources() (hpcflow.app.ElementIteration method) (hpcflow.sdk.core.element.ElementIteration method) get_time_stamp() (in module hpcflow.sdk.core.utils) get_ts_fmt() (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_ts_name_fmt() (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) get_unique_schedulers() (hpcflow.app.Submission method) (hpcflow.sdk.submission.submission.Submission method) get_unique_schedulers_of_jobscripts() (hpcflow.app.Submission static method) (hpcflow.sdk.submission.submission.Submission static method) get_unique_shells() (hpcflow.app.Submission method) (hpcflow.sdk.submission.submission.Submission method) get_user_data_dir() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) get_version_info() (hpcflow.app.DirectPosix method) (hpcflow.app.DirectWindows method) (hpcflow.app.SGEPosix method) (hpcflow.app.SlurmPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectScheduler method) (hpcflow.sdk.submission.schedulers.direct.DirectWindows method) (hpcflow.sdk.submission.schedulers.NullScheduler method) (hpcflow.sdk.submission.schedulers.Scheduler method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix method) (hpcflow.sdk.submission.shells.base.Shell method) (hpcflow.sdk.submission.shells.bash.Bash method) (hpcflow.sdk.submission.shells.bash.WSLBash method) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell method) get_wait_command() (hpcflow.sdk.submission.shells.base.Shell method) (hpcflow.sdk.submission.shells.bash.Bash method) (hpcflow.sdk.submission.shells.bash.WSLBash method) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell method) get_watcher_file_path() (in module hpcflow.sdk.helper.helper) group_by_dict_key_values() (in module hpcflow.sdk.core.utils) group_by_distinct (hpcflow.app.ElementGroup attribute) (hpcflow.sdk.core.element.ElementGroup attribute) group_by_resource() (hpcflow.sdk.persistence.pending.CommitResourceMap method) group_resource_map_into_jobscripts() (in module hpcflow.sdk.submission.jobscript) GroupList (class in hpcflow.app) (class in hpcflow.sdk.core.object_list)

H

has_default (hpcflow.sdk.core.task.InputStatus attribute) has_pending (hpcflow.sdk.persistence.base.PersistentStore property) (hpcflow.sdk.persistence.json.JSONPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore property) helper_timeout() (in module hpcflow.sdk.helper.helper) hpcflow command line option --clear-known-subs --config-dir --config-invocation-key --help --hpcflow-version --run-time-info --version --with-config hpcflow-cancel command line option --ref-type -r WORKFLOW_REF hpcflow-config command line option --invocation hpcflow-config-add-scheduler command line option --defaults NAME hpcflow-config-append command line option --json NAME VALUE hpcflow-config-get command line option --all --file NAME hpcflow-config-pop command line option INDEX NAME hpcflow-config-prepend command line option --json NAME VALUE hpcflow-config-set command line option --json NAME VALUE hpcflow-config-unset command line option NAME hpcflow-config-update command line option --json NAME VALUE hpcflow-demo-software-doSomething command line option --infile1 --infile2 --out --value -i1 -i2 -o -v hpcflow-get-config-path command line option --config-dir hpcflow-go command line option --format --js-parallelism --name --overwrite --path --store --string --ts-fmt --ts-name-fmt --wait TEMPLATE_FILE_OR_STR hpcflow-helper-pid command line option --file -f hpcflow-helper-restart command line option --timeout --timeout-check-interval --watch-interval hpcflow-helper-run command line option --timeout --timeout-check-interval --watch-interval hpcflow-helper-start command line option --timeout --timeout-check-interval --watch-interval hpcflow-internal-workflow command line option PATH hpcflow-internal-workflow-PATH-get-ear-skipped command line option EAR_ID hpcflow-internal-workflow-PATH-launch-direct-win-js command line option JOBSCRIPT_IDX SUBMISSION_IDX hpcflow-internal-workflow-PATH-save-parameter command line option EAR_ID NAME VALUE hpcflow-internal-workflow-PATH-set-ear-end command line option EAR_ID EXIT_CODE JS_ACT_IDX JS_IDX hpcflow-internal-workflow-PATH-set-ear-skip command line option EAR_ID hpcflow-internal-workflow-PATH-set-ear-start command line option EAR_ID hpcflow-internal-workflow-PATH-write-commands command line option EAR_ID JOBSCRIPT_IDX JS_ACTION_IDX SUBMISSION_IDX hpcflow-make command line option --format --name --overwrite --path --store --string --ts-fmt --ts-name-fmt TEMPLATE_FILE_OR_STR hpcflow-open-config command line option --path hpcflow-open-env-source command line option --name --path hpcflow-open-known-subs command line option --path hpcflow-open-log command line option --path hpcflow-open-user-data-dir command line option --path hpcflow-open-workflow command line option --path --ref-type -r WORKFLOW_REF hpcflow-reset-config command line option --config-dir hpcflow-show command line option --full --legend --max-recent --no-update -f -r hpcflow-submission command line option --os-info hpcflow-submission-shell-info command line option --exclude-os SHELL_NAME hpcflow-test command line option PY_TEST_ARGS hpcflow-test-hpcflow command line option PY_TEST_ARGS hpcflow-workflow command line option --ref-type -r WORKFLOW_REF hpcflow-workflow-WORKFLOW_REF-get-param command line option INDEX

hpcflow-workflow-WORKFLOW_REF-get-param-source command line option INDEX hpcflow-workflow-WORKFLOW_REF-is-param-set command line option INDEX hpcflow-workflow-WORKFLOW_REF-sub command line option SUB_IDX hpcflow-workflow-WORKFLOW_REF-sub-SUB_IDX-js command line option JS_IDX hpcflow-workflow-WORKFLOW_REF-submit command line option --js-parallelism --wait hpcflow-workflow-WORKFLOW_REF-wait command line option SUB_JS_IDX hpcflow-workflow-WORKFLOW_REF-zip command line option --log hpcflow-zip command line option --log --ref-type -r WORKFLOW_REF hpcflow.app module hpcflow.sdk module hpcflow.sdk.api module hpcflow.sdk.app module hpcflow.sdk.cli module hpcflow.sdk.config module hpcflow.sdk.config.callbacks module hpcflow.sdk.config.cli module hpcflow.sdk.config.config module hpcflow.sdk.config.config_file module hpcflow.sdk.config.errors module hpcflow.sdk.core module hpcflow.sdk.core.actions module hpcflow.sdk.core.command_files module hpcflow.sdk.core.commands module hpcflow.sdk.core.element module hpcflow.sdk.core.environment module hpcflow.sdk.core.errors module hpcflow.sdk.core.json_like module hpcflow.sdk.core.loop module hpcflow.sdk.core.object_list module hpcflow.sdk.core.parameters module hpcflow.sdk.core.task module hpcflow.sdk.core.task_schema module hpcflow.sdk.core.test_utils module hpcflow.sdk.core.utils module hpcflow.sdk.core.validation module hpcflow.sdk.core.workflow module hpcflow.sdk.core.zarr_io module hpcflow.sdk.data module hpcflow.sdk.data.template_components module hpcflow.sdk.demo module hpcflow.sdk.demo.cli module hpcflow.sdk.demo.data module hpcflow.sdk.demo.scripts module hpcflow.sdk.demo.scripts.demo_task_1_generate_t1_infile_1 module hpcflow.sdk.demo.scripts.demo_task_1_generate_t1_infile_2 module hpcflow.sdk.demo.scripts.demo_task_1_parse_p3 module hpcflow.sdk.demo.scripts.generate_t1_file_01 module hpcflow.sdk.demo.scripts.parse_t1_file_01 module hpcflow.sdk.demo.scripts.test_main_script module hpcflow.sdk.helper module hpcflow.sdk.helper.cli module hpcflow.sdk.helper.helper module hpcflow.sdk.helper.watcher module hpcflow.sdk.log module hpcflow.sdk.persistence module hpcflow.sdk.persistence.base module hpcflow.sdk.persistence.json module hpcflow.sdk.persistence.pending module hpcflow.sdk.persistence.store_resource module hpcflow.sdk.persistence.utils module hpcflow.sdk.persistence.zarr module hpcflow.sdk.runtime module hpcflow.sdk.scripting module hpcflow.sdk.submission module hpcflow.sdk.submission.jobscript module hpcflow.sdk.submission.jobscript_info module hpcflow.sdk.submission.schedulers module hpcflow.sdk.submission.schedulers.direct module hpcflow.sdk.submission.schedulers.sge module hpcflow.sdk.submission.schedulers.slurm module hpcflow.sdk.submission.schedulers.utils module hpcflow.sdk.submission.shells module hpcflow.sdk.submission.shells.base module hpcflow.sdk.submission.shells.bash module hpcflow.sdk.submission.shells.os_version module hpcflow.sdk.submission.shells.powershell module hpcflow.sdk.submission.submission module hpcflow.sdk.typing module HYBRID (hpcflow.sdk.core.parameters.ParallelMode attribute)

I

id_ (hpcflow.app.Element property) (hpcflow.app.ElementActionRun property) (hpcflow.app.ElementIteration property) (hpcflow.app.Workflow property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.core.workflow.Workflow property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.base.StoreElement attribute) (hpcflow.sdk.persistence.base.StoreElementIter attribute) (hpcflow.sdk.persistence.base.StoreParameter attribute) (hpcflow.sdk.persistence.base.StoreTask attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElement attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreParameter attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreTask attribute) ignore_invalid_actions() (hpcflow.app.TaskSchema class method) (hpcflow.sdk.core.task_schema.TaskSchema class method) IMPLICIT (hpcflow.app.ParameterPropagationMode attribute) IMPORT (hpcflow.app.InputSourceType attribute) import_() (hpcflow.app.InputSource class method) (hpcflow.sdk.core.parameters.InputSource class method) IncompatibleParallelModeError IncompatibleSGEPEError IncompatibleSLURMArgumentsError IncompatibleSLURMPartitionError INDEX hpcflow-config-pop command line option hpcflow-workflow-WORKFLOW_REF-get-param command line option hpcflow-workflow-WORKFLOW_REF-get-param-source command line option hpcflow-workflow-WORKFLOW_REF-is-param-set command line option index (hpcflow.app.Element property) (hpcflow.app.ElementActionRun property) (hpcflow.app.ElementIteration property) (hpcflow.app.ElementSet property) (hpcflow.app.Jobscript property) (hpcflow.app.Submission property) (hpcflow.app.Task property) (hpcflow.app.WorkflowLoop property) (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.core.loop.WorkflowLoop property) (hpcflow.sdk.core.task.ElementSet property) (hpcflow.sdk.core.task.Task property) (hpcflow.sdk.core.task.WorkflowTask property) (hpcflow.sdk.persistence.base.StoreElement attribute) (hpcflow.sdk.persistence.base.StoreTask attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElement attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreTask attribute) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.submission.Submission property) index() (in module hpcflow.sdk.core.object_list) infer_store() (in module hpcflow.sdk.persistence.utils) info (hpcflow.app.TaskSchema property) (hpcflow.sdk.core.task_schema.TaskSchema property) init_loop_index() (hpcflow.app.Element method) (hpcflow.sdk.core.element.Element method) initialise_EARs() (hpcflow.app.WorkflowTask method) (hpcflow.sdk.core.task.WorkflowTask method) inode() (hpcflow.sdk.core.utils.JSONLikeDirSnapShot method) INPUT (hpcflow.app.TaskSourceType attribute) input_file (hpcflow.app.InputFileGenerator attribute) (hpcflow.sdk.core.command_files.InputFileGenerator attribute) INPUT_FILE_GENERATOR (hpcflow.app.ActionScopeType attribute) input_file_generator (hpcflow.sdk.core.actions.ElementActionOLD attribute) input_file_generator() (hpcflow.app.ActionScope class method) (hpcflow.sdk.core.actions.ActionScope class method) input_files (hpcflow.app.Element property) (hpcflow.app.ElementAction property) (hpcflow.app.ElementActionRun property) (hpcflow.app.ElementIteration property) (hpcflow.sdk.core.actions.ElementAction property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property) input_files_path (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) input_or_output (hpcflow.app.SchemaInput property) (hpcflow.app.SchemaOutput property) (hpcflow.sdk.core.parameters.SchemaInput property) (hpcflow.sdk.core.parameters.SchemaOutput property) input_path (hpcflow.app.ValueSequence property) (hpcflow.sdk.core.parameters.ValueSequence property) input_source_idx (hpcflow.app.Element property) (hpcflow.sdk.core.element.Element property) input_sources (hpcflow.app.Element property) (hpcflow.sdk.core.element.Element property) input_type (hpcflow.app.ValueSequence property) (hpcflow.sdk.core.parameters.ValueSequence property) input_types (hpcflow.app.ElementSet property) (hpcflow.app.TaskSchema property) (hpcflow.sdk.core.task.ElementSet property) (hpcflow.sdk.core.task_schema.TaskSchema property) InputFile (class in hpcflow.app) (class in hpcflow.sdk.core.command_files) InputFileGenerator (class in hpcflow.app) (class in hpcflow.sdk.core.command_files) InputFileGeneratorSource (class in hpcflow.app) (class in hpcflow.sdk.core.command_files) inputs (hpcflow.app.Element property) (hpcflow.app.ElementAction property) (hpcflow.app.ElementActionRun property) (hpcflow.app.ElementIteration property) (hpcflow.app.InputFileGenerator attribute) (hpcflow.app.OutputFileParser attribute) (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.actions.ElementAction property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.command_files.InputFileGenerator attribute) (hpcflow.sdk.core.command_files.OutputFileParser attribute) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.core.task.WorkflowTask property)

InputSource (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) InputSourceType (class in hpcflow.app) InputSourceValidationError InputStatus (class in hpcflow.sdk.core.task) InputValue (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) InputValueDuplicateSequenceAddress insert_ID (hpcflow.app.Task property) (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.task.Task property) (hpcflow.sdk.core.task.WorkflowTask property) InvalidIdentifier InvalidInputSourceTaskReference invoc_data (hpcflow.sdk.config.config_file.ConfigFile property) invocation_command (hpcflow.sdk.runtime.RunTimeInfo property) is_app_data_script() (hpcflow.app.Action static method) (hpcflow.sdk.core.actions.Action static method) is_array (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) is_config_loaded (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) is_dict_values (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) is_dict_values_ensure_list (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) is_enum (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) is_extra (hpcflow.sdk.core.task.InputStatus property) is_file (hpcflow.app.Parameter attribute) (hpcflow.sdk.core.parameters.Parameter attribute) is_fsspec_url() (in module hpcflow.sdk.core.utils) is_in() (hpcflow.app.InputSource method) (hpcflow.sdk.core.parameters.InputSource method) is_input_type_provided() (hpcflow.app.ElementSet method) (hpcflow.sdk.core.task.ElementSet method) is_input_type_required() (hpcflow.app.Action method) (hpcflow.app.Task method) (hpcflow.sdk.core.actions.Action method) (hpcflow.sdk.core.task.Task method) is_item_set() (hpcflow.sdk.config.config_file.ConfigFile method) is_jobscript_active() (hpcflow.app.DirectPosix method) (hpcflow.app.DirectWindows method) (hpcflow.app.SGEPosix method) (hpcflow.app.SlurmPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectScheduler method) (hpcflow.sdk.submission.schedulers.direct.DirectWindows method) (hpcflow.sdk.submission.schedulers.Scheduler method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix method) is_multiple (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) is_num_cores_supported() (hpcflow.app.DirectPosix static method) (hpcflow.app.DirectWindows static method) (hpcflow.app.SGEPosix static method) (hpcflow.app.SlurmPosix static method) (hpcflow.sdk.submission.schedulers.direct.DirectPosix static method) (hpcflow.sdk.submission.schedulers.direct.DirectScheduler static method) (hpcflow.sdk.submission.schedulers.direct.DirectWindows static method) (hpcflow.sdk.submission.schedulers.NullScheduler static method) (hpcflow.sdk.submission.schedulers.Scheduler static method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix static method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix static method) is_parallel (hpcflow.app.ElementResources property) (hpcflow.sdk.core.element.ElementResources property) is_parameter_set() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) is_pending (hpcflow.app.Element property) (hpcflow.app.ElementActionRun property) (hpcflow.app.ElementIteration property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.base.StoreElement attribute) (hpcflow.sdk.persistence.base.StoreElementIter attribute) (hpcflow.sdk.persistence.base.StoreParameter attribute) (hpcflow.sdk.persistence.base.StoreTask attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElement attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreParameter attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreTask attribute) is_provided (hpcflow.sdk.core.task.InputStatus attribute) is_required (hpcflow.sdk.core.task.InputStatus attribute) is_set (hpcflow.app.ElementParameter property) (hpcflow.sdk.core.element.ElementParameter property) (hpcflow.sdk.persistence.base.StoreParameter attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreParameter attribute) is_single_attribute (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) is_sub_value (hpcflow.app.InputValue property) (hpcflow.app.ValueSequence property) (hpcflow.sdk.core.parameters.InputValue property) (hpcflow.sdk.core.parameters.ValueSequence property) is_submittable (hpcflow.sdk.persistence.base.PersistentStore property) (hpcflow.sdk.persistence.json.JSONPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore property) is_submitted (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) is_template_components_loaded (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) isdir() (hpcflow.sdk.core.utils.JSONLikeDirSnapShot method) islice() (hpcflow.app.Elements method) (hpcflow.app.Parameters method) (hpcflow.sdk.core.task.Elements method) (hpcflow.sdk.core.task.Parameters method) iterable_parameters (hpcflow.app.WorkflowLoop property) (hpcflow.sdk.core.loop.WorkflowLoop property) iteration_IDs (hpcflow.app.Element property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.persistence.base.StoreElement attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElement attribute) iterations (hpcflow.app.Element property) (hpcflow.sdk.core.element.Element property)

J

Jobscript (class in hpcflow.app) (class in hpcflow.sdk.submission.jobscript) JOBSCRIPT_IDX hpcflow-internal-workflow-PATH-launch-direct-win-js command line option hpcflow-internal-workflow-PATH-write-commands command line option jobscript_indices (hpcflow.app.Submission property) (hpcflow.sdk.submission.submission.Submission property) jobscript_name (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) jobscript_parallelism (hpcflow.sdk.persistence.base.PersistentStoreFeatures attribute) jobscript_path (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) JobscriptElementState (class in hpcflow.sdk.submission.jobscript_info) jobscripts (hpcflow.app.Submission property) (hpcflow.sdk.submission.submission.Submission property) jobscripts_to_list() (in module hpcflow.sdk.submission.jobscript) JobscriptSubmissionFailure join() (hpcflow.sdk.helper.watcher.MonitorController method) JS_ACT_IDX hpcflow-internal-workflow-PATH-set-ear-end command line option JS_ACTION_IDX hpcflow-internal-workflow-PATH-write-commands command line option JS_DIRECT_HEADER (hpcflow.sdk.submission.shells.bash.Bash attribute) (hpcflow.sdk.submission.shells.bash.WSLBash attribute) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell attribute) JS_ELEMENT_ARRAY (hpcflow.sdk.submission.shells.bash.Bash attribute) (hpcflow.sdk.submission.shells.bash.WSLBash attribute) JS_ELEMENT_LOOP (hpcflow.sdk.submission.shells.bash.Bash attribute) (hpcflow.sdk.submission.shells.bash.WSLBash attribute) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell attribute)

JS_ENV_SETUP_INDENT (hpcflow.sdk.submission.shells.bash.Bash attribute) (hpcflow.sdk.submission.shells.bash.WSLBash attribute) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell attribute) JS_EXT (hpcflow.sdk.submission.shells.bash.Bash attribute) (hpcflow.sdk.submission.shells.bash.WSLBash attribute) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell attribute) JS_HEADER (hpcflow.sdk.submission.shells.bash.Bash attribute) (hpcflow.sdk.submission.shells.bash.WSLBash attribute) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell attribute) JS_IDX hpcflow-internal-workflow-PATH-set-ear-end command line option hpcflow-workflow-WORKFLOW_REF-sub-SUB_IDX-js command line option JS_INDENT (hpcflow.sdk.submission.shells.bash.Bash attribute) (hpcflow.sdk.submission.shells.bash.WSLBash attribute) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell attribute) JS_MAIN (hpcflow.sdk.submission.shells.bash.Bash attribute) (hpcflow.sdk.submission.shells.bash.WSLBash attribute) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell attribute) JS_parallelism (hpcflow.app.Submission property) (hpcflow.sdk.submission.submission.Submission property) JS_SCHEDULER_HEADER (hpcflow.sdk.submission.shells.bash.Bash attribute) (hpcflow.sdk.submission.shells.bash.WSLBash attribute) JS_SHEBANG (hpcflow.sdk.submission.shells.bash.Bash attribute) (hpcflow.sdk.submission.shells.bash.WSLBash attribute) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell attribute) json_like_name (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) JSONFileStoreResource (class in hpcflow.sdk.persistence.store_resource) JSONLike (class in hpcflow.sdk.core.json_like) JSONLikeDirSnapShot (class in hpcflow.sdk.core.utils) JSONPersistentStore (class in hpcflow.sdk.persistence.json)

K

kill_proc_tree() (in module hpcflow.sdk.helper.helper) known_subs_file_name (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property)

known_subs_file_path (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property)

L

label (hpcflow.app.FileSpec attribute) (hpcflow.sdk.core.command_files.FileSpec attribute) labelled_info() (hpcflow.app.SchemaInput method) (hpcflow.sdk.core.parameters.SchemaInput method) labelled_type (hpcflow.app.InputValue property) (hpcflow.app.ValueSequence property) (hpcflow.sdk.core.parameters.InputValue property) (hpcflow.sdk.core.parameters.ValueSequence property) latest_iteration (hpcflow.app.Element property) (hpcflow.sdk.core.element.Element property) linux_release_file (hpcflow.sdk.submission.shells.bash.Bash property) (hpcflow.sdk.submission.shells.bash.WSLBash property) list_attrs() (hpcflow.app.CommandFilesList method) (hpcflow.app.EnvironmentsList method) (hpcflow.app.ExecutablesList method) (hpcflow.app.GroupList method) (hpcflow.app.ParametersList method) (hpcflow.app.ResourceList method) (hpcflow.app.TaskList method) (hpcflow.app.TaskSchemasList method) (hpcflow.app.TaskTemplateList method) (hpcflow.app.WorkflowLoopList method) (hpcflow.app.WorkflowTaskList method) (hpcflow.sdk.core.object_list.AppDataList method) (hpcflow.sdk.core.object_list.CommandFilesList method) (hpcflow.sdk.core.object_list.DotAccessObjectList method) (hpcflow.sdk.core.object_list.EnvironmentsList method) (hpcflow.sdk.core.object_list.ExecutablesList method) (hpcflow.sdk.core.object_list.GroupList method) (hpcflow.sdk.core.object_list.ObjectList method) (hpcflow.sdk.core.object_list.ParametersList method) (hpcflow.sdk.core.object_list.ResourceList method) (hpcflow.sdk.core.object_list.TaskList method) (hpcflow.sdk.core.object_list.TaskSchemasList method) (hpcflow.sdk.core.object_list.TaskTemplateList method) (hpcflow.sdk.core.object_list.WorkflowLoopList method) (hpcflow.sdk.core.object_list.WorkflowTaskList method)

list_to_dict() (in module hpcflow.sdk.core.utils) load_builtin_template_component_data() (hpcflow.sdk.app.App class method) (hpcflow.sdk.app.BaseApp class method) load_config() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) (in module hpcflow.sdk.core.utils) load_template_components() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) LOCAL (hpcflow.app.InputSourceType attribute) local() (hpcflow.app.InputSource class method) (hpcflow.sdk.core.parameters.InputSource class method) log (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) logger (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) (hpcflow.sdk.persistence.base.PersistentStore property) (hpcflow.sdk.persistence.json.JSONPersistentStore property) (hpcflow.sdk.persistence.pending.PendingChanges property) (hpcflow.sdk.persistence.store_resource.JSONFileStoreResource property) (hpcflow.sdk.persistence.store_resource.StoreResource property) (hpcflow.sdk.persistence.store_resource.ZarrAttrsStoreResource property) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore property) Loop (class in hpcflow.app) (class in hpcflow.sdk.core.loop) loop_idx (hpcflow.app.ElementIteration property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.persistence.base.StoreElementIter attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter attribute) LoopAlreadyExistsError loops (hpcflow.app.Workflow property) (hpcflow.app.WorkflowTemplate attribute) (hpcflow.sdk.core.workflow.Workflow property) (hpcflow.sdk.core.workflow.WorkflowTemplate attribute)

M

MAIN (hpcflow.app.ActionScopeType attribute) main() (hpcflow.app.ActionScope class method) (hpcflow.sdk.core.actions.ActionScope class method) make_actions() (in module hpcflow.sdk.core.test_utils) make_and_submit_workflow() (in module hpcflow.app) make_artifact_dirs() (hpcflow.app.Jobscript method) (hpcflow.sdk.submission.jobscript.Jobscript method) make_cli() (in module hpcflow.sdk.cli) make_parameters() (in module hpcflow.sdk.core.test_utils) make_persistent() (hpcflow.app.InputFile method) (hpcflow.app.InputFileGeneratorSource method) (hpcflow.app.InputValue method) (hpcflow.app.OutputFileParserSource method) (hpcflow.app.ResourceSpec method) (hpcflow.app.TaskSchema method) (hpcflow.app.ValuePerturbation method) (hpcflow.app.ValueSequence method) (hpcflow.sdk.core.command_files.InputFile method) (hpcflow.sdk.core.command_files.InputFileGeneratorSource method) (hpcflow.sdk.core.command_files.OutputFileParserSource method) (hpcflow.sdk.core.parameters.AbstractInputValue method) (hpcflow.sdk.core.parameters.InputValue method) (hpcflow.sdk.core.parameters.ResourceSpec method) (hpcflow.sdk.core.parameters.ValuePerturbation method) (hpcflow.sdk.core.parameters.ValueSequence method) (hpcflow.sdk.core.task_schema.TaskSchema method) make_schemas() (in module hpcflow.sdk.core.test_utils) make_tasks() (in module hpcflow.sdk.core.test_utils) make_test_store_from_spec() (hpcflow.sdk.persistence.json.JSONPersistentStore class method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore class method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore class method) make_workflow() (in module hpcflow.app) (in module hpcflow.sdk.core.test_utils) make_workflow_id() (in module hpcflow.sdk.core.utils) MalformedParameterPathError merge_jobscripts_across_tasks() (in module hpcflow.sdk.submission.jobscript) merge_template_resources() (hpcflow.app.ResourceList method) (hpcflow.sdk.core.object_list.ResourceList method) metadata (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) MissingActionEnvironment MissingCompatibleActionEnvironment MissingEnvironmentFileError MissingInputs MissingParameterData MissingStoreEARError MissingStoreElementError MissingStoreElementIterationError MissingStoreTaskError MissingTaskSchemaFileError module hpcflow.app hpcflow.sdk hpcflow.sdk.api hpcflow.sdk.app hpcflow.sdk.cli hpcflow.sdk.config hpcflow.sdk.config.callbacks hpcflow.sdk.config.cli hpcflow.sdk.config.config hpcflow.sdk.config.config_file hpcflow.sdk.config.errors hpcflow.sdk.core hpcflow.sdk.core.actions hpcflow.sdk.core.command_files hpcflow.sdk.core.commands hpcflow.sdk.core.element hpcflow.sdk.core.environment hpcflow.sdk.core.errors hpcflow.sdk.core.json_like hpcflow.sdk.core.loop hpcflow.sdk.core.object_list hpcflow.sdk.core.parameters hpcflow.sdk.core.task hpcflow.sdk.core.task_schema hpcflow.sdk.core.test_utils hpcflow.sdk.core.utils hpcflow.sdk.core.validation hpcflow.sdk.core.workflow hpcflow.sdk.core.zarr_io hpcflow.sdk.data hpcflow.sdk.data.template_components hpcflow.sdk.demo hpcflow.sdk.demo.cli hpcflow.sdk.demo.data hpcflow.sdk.demo.scripts hpcflow.sdk.demo.scripts.demo_task_1_generate_t1_infile_1 hpcflow.sdk.demo.scripts.demo_task_1_generate_t1_infile_2 hpcflow.sdk.demo.scripts.demo_task_1_parse_p3 hpcflow.sdk.demo.scripts.generate_t1_file_01 hpcflow.sdk.demo.scripts.parse_t1_file_01 hpcflow.sdk.demo.scripts.test_main_script hpcflow.sdk.helper hpcflow.sdk.helper.cli hpcflow.sdk.helper.helper hpcflow.sdk.helper.watcher hpcflow.sdk.log hpcflow.sdk.persistence hpcflow.sdk.persistence.base hpcflow.sdk.persistence.json hpcflow.sdk.persistence.pending hpcflow.sdk.persistence.store_resource hpcflow.sdk.persistence.utils hpcflow.sdk.persistence.zarr hpcflow.sdk.runtime hpcflow.sdk.scripting hpcflow.sdk.submission hpcflow.sdk.submission.jobscript hpcflow.sdk.submission.jobscript_info hpcflow.sdk.submission.schedulers hpcflow.sdk.submission.schedulers.direct hpcflow.sdk.submission.schedulers.sge hpcflow.sdk.submission.schedulers.slurm hpcflow.sdk.submission.schedulers.utils hpcflow.sdk.submission.shells hpcflow.sdk.submission.shells.base hpcflow.sdk.submission.shells.bash hpcflow.sdk.submission.shells.os_version hpcflow.sdk.submission.shells.powershell hpcflow.sdk.submission.submission hpcflow.sdk.typing

MonitorController (class in hpcflow.sdk.helper.watcher) mro() (hpcflow.sdk.app.Singleton method) (hpcflow.sdk.core.utils.Singleton method) mtime() (hpcflow.sdk.core.utils.JSONLikeDirSnapShot method) multiplicative_factor (hpcflow.app.ValuePerturbation attribute) (hpcflow.sdk.core.parameters.ValuePerturbation attribute)

N

NAME hpcflow-config-add-scheduler command line option hpcflow-config-append command line option hpcflow-config-get command line option hpcflow-config-pop command line option hpcflow-config-prepend command line option hpcflow-config-set command line option hpcflow-config-unset command line option hpcflow-config-update command line option hpcflow-internal-workflow-PATH-save-parameter command line option name (hpcflow.app.ElementGroup attribute) (hpcflow.app.FileSpec attribute) (hpcflow.app.Loop property) (hpcflow.app.SchemaInput property) (hpcflow.app.SchemaOutput property) (hpcflow.app.SchemaParameter property) (hpcflow.app.Task property) (hpcflow.app.TaskObjective attribute) (hpcflow.app.TaskSchema property) (hpcflow.app.ValuePerturbation attribute) (hpcflow.app.Workflow property) (hpcflow.app.WorkflowLoop property) (hpcflow.app.WorkflowTask property) (hpcflow.app.WorkflowTemplate attribute) (hpcflow.sdk.core.command_files.FileSpec attribute) (hpcflow.sdk.core.element.ElementGroup attribute) (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) (hpcflow.sdk.core.loop.Loop property) (hpcflow.sdk.core.loop.WorkflowLoop property) (hpcflow.sdk.core.parameters.SchemaInput property) (hpcflow.sdk.core.parameters.SchemaOutput property) (hpcflow.sdk.core.parameters.SchemaParameter property) (hpcflow.sdk.core.parameters.ValuePerturbation attribute) (hpcflow.sdk.core.task.Task property) (hpcflow.sdk.core.task.WorkflowTask property) (hpcflow.sdk.core.task_schema.TaskObjective attribute) (hpcflow.sdk.core.task_schema.TaskSchema property) (hpcflow.sdk.core.workflow.Workflow property) (hpcflow.sdk.core.workflow.WorkflowTemplate attribute) needs_submit (hpcflow.app.Submission property) (hpcflow.sdk.submission.submission.Submission property) nesting_order (hpcflow.app.ElementPropagation attribute) (hpcflow.sdk.core.task.ElementPropagation attribute) NEVER (hpcflow.app.ParameterPropagationMode attribute) new_empty_loop() (hpcflow.app.WorkflowLoop class method) (hpcflow.sdk.core.loop.WorkflowLoop class method) new_empty_task() (hpcflow.app.WorkflowTask class method) (hpcflow.sdk.core.task.WorkflowTask class method) NoCompatibleSGEPEError non_iterable_parameters (hpcflow.app.Loop property) (hpcflow.sdk.core.loop.Loop property) non_universal_input_types (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) normalise() (hpcflow.app.ResourceList class method) (hpcflow.sdk.core.object_list.ResourceList class method) normalised_files_path (hpcflow.app.InputFile property) (hpcflow.sdk.core.command_files.InputFile property) normalised_inputs_path (hpcflow.app.InputValue property) (hpcflow.app.ValueSequence property) (hpcflow.sdk.core.parameters.InputValue property) (hpcflow.sdk.core.parameters.ValueSequence property) normalised_path (hpcflow.app.InputFile property) (hpcflow.app.InputValue property) (hpcflow.app.ResourceSpec property) (hpcflow.app.ValueSequence property) (hpcflow.sdk.core.command_files.InputFile property) (hpcflow.sdk.core.parameters.InputValue property) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.parameters.ValueSequence property)

normalised_resources_path (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.parameters.ResourceSpec property) NotSubmitMachineError NULL (hpcflow.sdk.core.parameters.NullDefault attribute) NullDefault (class in hpcflow.sdk.core.parameters) NullScheduler (class in hpcflow.sdk.submission.schedulers) num_actions (hpcflow.app.Jobscript property) (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.task.WorkflowTask property) (hpcflow.sdk.submission.jobscript.Jobscript property) num_added_iterations (hpcflow.app.WorkflowLoop property) (hpcflow.sdk.core.loop.WorkflowLoop property) num_added_tasks (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) num_all_schema_actions (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) num_cores (hpcflow.app.ElementResources attribute) (hpcflow.app.ExecutableInstance attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.environment.ExecutableInstance attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) num_cores_per_node (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) num_EARs (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) num_element_iterations (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) num_element_sets (hpcflow.app.Task property) (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.task.Task property) (hpcflow.sdk.core.task.WorkflowTask property) num_elements (hpcflow.app.Jobscript property) (hpcflow.app.Workflow property) (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.task.WorkflowTask property) (hpcflow.sdk.core.workflow.Workflow property) (hpcflow.sdk.submission.jobscript.Jobscript property) num_iterations (hpcflow.app.Loop property) (hpcflow.app.WorkflowLoop property) (hpcflow.sdk.core.loop.Loop property) (hpcflow.sdk.core.loop.WorkflowLoop property) num_loops (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) num_nodes (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) num_runs (hpcflow.app.ElementAction property) (hpcflow.sdk.core.actions.ElementAction property) num_submissions (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) num_tasks (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) num_threads (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) number (hpcflow.app.ElementRepeats attribute) (hpcflow.sdk.core.element.ElementRepeats attribute) NumCores (class in hpcflow.app) (class in hpcflow.sdk.core.environment)

O

objective (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) ObjectList (class in hpcflow.sdk.core.object_list) on_modified() (hpcflow.sdk.helper.watcher.MonitorController method) (hpcflow.sdk.helper.watcher.WorkflowMonitor method) open() (hpcflow.sdk.persistence.store_resource.JSONFileStoreResource method) (hpcflow.sdk.persistence.store_resource.StoreResource method) (hpcflow.sdk.persistence.store_resource.ZarrAttrsStoreResource method) open_file() (in module hpcflow.sdk.core.utils) options (hpcflow.app.OutputFileParser attribute) (hpcflow.sdk.core.command_files.OutputFileParser attribute) os_name (hpcflow.app.ElementResources attribute) (hpcflow.app.Jobscript property) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.submission.jobscript.Jobscript property) output (hpcflow.app.OutputFileParser attribute) OUTPUT (hpcflow.app.TaskSourceType attribute) output (hpcflow.sdk.core.command_files.OutputFileParser attribute) OUTPUT_FILE_PARSER (hpcflow.app.ActionScopeType attribute) output_file_parser() (hpcflow.app.ActionScope class method) (hpcflow.sdk.core.actions.ActionScope class method) output_files (hpcflow.app.Element property) (hpcflow.app.ElementAction property) (hpcflow.app.ElementActionRun property) (hpcflow.app.ElementIteration property) (hpcflow.app.OutputFileParser attribute) (hpcflow.sdk.core.actions.ElementAction property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.command_files.OutputFileParser attribute) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property)

output_labels (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) output_parser (hpcflow.sdk.core.actions.ElementActionOLD attribute) output_types (hpcflow.app.TaskSchema property) (hpcflow.sdk.core.task_schema.TaskSchema property) OutputFileParser (class in hpcflow.app) (class in hpcflow.sdk.core.command_files) OutputFileParserSource (class in hpcflow.app) (class in hpcflow.sdk.core.command_files) OutputLabel (class in hpcflow.app) (class in hpcflow.sdk.core.task) outputs (hpcflow.app.Element property) (hpcflow.app.ElementAction property) (hpcflow.app.ElementActionRun property) (hpcflow.app.ElementIteration property) (hpcflow.app.OutputFileParser attribute) (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.actions.ElementAction property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.command_files.OutputFileParser attribute) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.core.task.WorkflowTask property) outstanding_jobscripts (hpcflow.app.Submission property) (hpcflow.sdk.submission.submission.Submission property)

P

P1_parameter_cls (class in hpcflow.sdk.core.test_utils) parallel_mode (hpcflow.app.ElementResources attribute) (hpcflow.app.ExecutableInstance attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.environment.ExecutableInstance attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) ParallelMode (class in hpcflow.sdk.core.parameters) Parameter (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) parameter (hpcflow.app.SchemaOutput attribute) (hpcflow.app.SubParameter attribute) (hpcflow.app.ValueSequence property) (hpcflow.sdk.core.parameters.SchemaOutput attribute) (hpcflow.sdk.core.parameters.SubParameter attribute) (hpcflow.sdk.core.parameters.ValueSequence property) ParameterPath (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) ParameterPropagationMode (class in hpcflow.app) Parameters (class in hpcflow.app) (class in hpcflow.sdk.core.task) parameters (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) ParametersList (class in hpcflow.app) (class in hpcflow.sdk.core.object_list) ParameterSpecValidationError ParameterValue (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) parent (hpcflow.app.ElementParameter attribute) (hpcflow.sdk.core.element.ElementParameter attribute) parent_ref (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) parse_jobscript_wait_spec() (in module hpcflow.sdk.cli) parse_submission_output() (hpcflow.app.DirectPosix method) (hpcflow.app.DirectWindows method) (hpcflow.app.SGEPosix method) (hpcflow.app.SlurmPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectScheduler method) (hpcflow.sdk.submission.schedulers.direct.DirectWindows method) (hpcflow.sdk.submission.schedulers.NullScheduler method) (hpcflow.sdk.submission.schedulers.Scheduler method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix method) parse_t1_file_01() (in module hpcflow.sdk.demo.scripts.parse_t1_file_01) parse_watch_workflows_file() (hpcflow.sdk.helper.watcher.MonitorController static method) PARTIALLY_SUBMITTED (hpcflow.sdk.submission.submission.SubmissionStatus attribute) PATH hpcflow-internal-workflow command line option path (hpcflow.app.ElementParameter attribute) (hpcflow.app.InputFile property) (hpcflow.app.InputFileGeneratorSource property) (hpcflow.app.OutputFileParserSource property) (hpcflow.app.ParameterPath attribute) (hpcflow.app.Parameters attribute) (hpcflow.app.Submission property) (hpcflow.app.ValuePerturbation attribute) (hpcflow.sdk.core.command_files.InputFile property) (hpcflow.sdk.core.command_files.InputFileGeneratorSource property) (hpcflow.sdk.core.command_files.OutputFileParserSource property) (hpcflow.sdk.core.element.ElementParameter attribute) (hpcflow.sdk.core.parameters.ParameterPath attribute) (hpcflow.sdk.core.parameters.ValuePerturbation attribute) (hpcflow.sdk.core.task.Parameters attribute) (hpcflow.sdk.submission.submission.Submission property) path() (hpcflow.sdk.core.utils.JSONLikeDirSnapShot method) path_split (hpcflow.app.ValueSequence property) (hpcflow.sdk.core.parameters.ValueSequence property) path_type (hpcflow.app.ValueSequence property) (hpcflow.sdk.core.parameters.ValueSequence property) paths (hpcflow.sdk.core.utils.JSONLikeDirSnapShot property) pending (hpcflow.sdk.core.actions.EARStatus attribute) (hpcflow.sdk.submission.jobscript_info.JobscriptElementState attribute)

PENDING (hpcflow.sdk.submission.submission.SubmissionStatus attribute) PendingChanges (class in hpcflow.sdk.persistence.pending) perm_error_retry() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) persistence_logger (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) PersistentStore (class in hpcflow.sdk.persistence.base) PersistentStoreFeatures (class in hpcflow.sdk.persistence.base) pop() (hpcflow.sdk.config.config.Config method) prefixed_names_unlabelled (hpcflow.app.ElementInputFiles property) (hpcflow.app.ElementInputs property) (hpcflow.app.ElementOutputFiles property) (hpcflow.app.ElementOutputs property) (hpcflow.sdk.core.element.ElementInputFiles property) (hpcflow.sdk.core.element.ElementInputs property) (hpcflow.sdk.core.element.ElementOutputFiles property) (hpcflow.sdk.core.element.ElementOutputs property) prefixed_names_unlabelled_str (hpcflow.app.ElementInputFiles property) (hpcflow.app.ElementInputs property) (hpcflow.app.ElementOutputFiles property) (hpcflow.app.ElementOutputs property) (hpcflow.sdk.core.element.ElementInputFiles property) (hpcflow.sdk.core.element.ElementInputs property) (hpcflow.sdk.core.element.ElementOutputFiles property) (hpcflow.sdk.core.element.ElementOutputs property) prepare_element_resolution() (hpcflow.app.Task method) (hpcflow.sdk.core.task.Task method) prepare_element_run_dirs() (hpcflow.sdk.submission.shells.base.Shell method) (hpcflow.sdk.submission.shells.bash.Bash method) (hpcflow.sdk.submission.shells.bash.WSLBash method) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell method) prepare_JS_path() (hpcflow.sdk.submission.shells.base.Shell method) (hpcflow.sdk.submission.shells.bash.Bash method) (hpcflow.sdk.submission.shells.bash.WSLBash method) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell method) prepare_persistent_copy() (hpcflow.app.ElementSet method) (hpcflow.sdk.core.task.ElementSet method) prepare_test_store_from_spec() (hpcflow.sdk.persistence.base.PersistentStore static method) (hpcflow.sdk.persistence.json.JSONPersistentStore static method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore static method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore static method) prepared (hpcflow.sdk.core.actions.EARStatus attribute) prepend() (hpcflow.sdk.config.config.Config method) PrettyPrinter (class in hpcflow.sdk.core.utils) process_ID (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) process_JS_header_args() (hpcflow.sdk.submission.shells.base.Shell method) (hpcflow.sdk.submission.shells.bash.Bash method) (hpcflow.sdk.submission.shells.bash.WSLBash method) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell method) process_resources() (hpcflow.app.DirectPosix class method) (hpcflow.app.DirectWindows class method) (hpcflow.app.SGEPosix class method) (hpcflow.app.SlurmPosix class method) (hpcflow.sdk.submission.schedulers.direct.DirectPosix class method) (hpcflow.sdk.submission.schedulers.direct.DirectScheduler class method) (hpcflow.sdk.submission.schedulers.direct.DirectWindows class method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix class method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix class method) PROCESSING (hpcflow.app.ActionScopeType attribute) processing() (hpcflow.app.ActionScope class method) (hpcflow.sdk.core.actions.ActionScope class method) propagation_mode (hpcflow.app.SchemaOutput attribute) (hpcflow.sdk.core.parameters.SchemaOutput attribute) provides_parameters (hpcflow.app.TaskSchema property) (hpcflow.sdk.core.task_schema.TaskSchema property) provides_parameters() (hpcflow.app.Task method) (hpcflow.sdk.core.task.Task method) PY_TEST_ARGS hpcflow-test command line option hpcflow-test-hpcflow command line option

R

raise_on_missing (hpcflow.app.Parameters attribute) (hpcflow.sdk.core.task.Parameters attribute) read_contents() (hpcflow.app.InputFile method) (hpcflow.app.InputFileGeneratorSource method) (hpcflow.app.OutputFileParserSource method) (hpcflow.sdk.core.command_files.InputFile method) (hpcflow.sdk.core.command_files.InputFileGeneratorSource method) (hpcflow.sdk.core.command_files.OutputFileParserSource method) read_JSON_file() (in module hpcflow.sdk.core.utils) read_JSON_string() (in module hpcflow.sdk.core.utils) read_known_submissions_file() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) read_YAML() (in module hpcflow.sdk.core.utils) read_YAML_file() (in module hpcflow.sdk.core.utils) register_config_get_callback() (hpcflow.sdk.config.config.Config method) register_config_set_callback() (hpcflow.sdk.config.config.Config method) register_input_file_writer() (in module hpcflow.sdk.scripting) register_output_parser() (in module hpcflow.sdk.scripting) reinstate_replaced_dir() (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) reload_config() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) reload_template_components() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) remove_ansi_escape_sequences() (in module hpcflow.sdk.core.utils) remove_path() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) remove_replaced_dir() (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) rename_path() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) replace_items() (in module hpcflow.sdk.core.utils) reset() (hpcflow.sdk.config.config.Config method) (hpcflow.sdk.persistence.pending.PendingChanges method) reset_config() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method)

reshape() (in module hpcflow.sdk.core.utils) resolve_element_data_indices() (hpcflow.app.WorkflowTask static method) (hpcflow.sdk.core.task.WorkflowTask static method) resolve_fsspec() (in module hpcflow.sdk.core.workflow) resolve_jobscript_dependencies() (in module hpcflow.sdk.submission.jobscript) resolve_jobscripts() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) resource_scope (hpcflow.app.ValueSequence property) (hpcflow.sdk.core.parameters.ValueSequence property) ResourceList (class in hpcflow.app) (class in hpcflow.sdk.core.object_list) resources (hpcflow.app.ElementActionRun property) (hpcflow.app.Jobscript property) (hpcflow.app.WorkflowTemplate attribute) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.workflow.WorkflowTemplate attribute) (hpcflow.sdk.submission.jobscript.Jobscript property) ResourceSpec (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) ResourceValidationError restart_helper() (in module hpcflow.sdk.helper.helper) return_element_parameters (hpcflow.app.Parameters attribute) (hpcflow.sdk.core.task.Parameters attribute) rich_repr (hpcflow.sdk.core.actions.EARStatus property) (hpcflow.sdk.submission.jobscript_info.JobscriptElementState property) root_action (hpcflow.sdk.core.actions.ElementActionOLD attribute) rule (hpcflow.app.ActionRule attribute) (hpcflow.sdk.core.actions.ActionRule attribute) run_cmd() (in module hpcflow.sdk.submission.schedulers.utils) run_helper() (in module hpcflow.sdk.helper.helper) run_hpcflow_tests() (in module hpcflow.app) run_tests() (in module hpcflow.app) run_time_info (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) running (hpcflow.sdk.core.actions.EARStatus attribute) (hpcflow.sdk.submission.jobscript_info.JobscriptElementState attribute) runs (hpcflow.app.ElementAction property) (hpcflow.sdk.core.actions.ElementAction property) runtime_info_logger (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) RunTimeInfo (class in hpcflow.sdk.runtime)

S

save() (hpcflow.sdk.config.config.Config method) (hpcflow.sdk.config.config_file.ConfigFile method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) save_files (hpcflow.app.OutputFileParser attribute) (hpcflow.sdk.core.command_files.OutputFileParser attribute) save_parameter() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) Scheduler (class in hpcflow.sdk.submission.schedulers) scheduler (hpcflow.app.ElementResources attribute) (hpcflow.app.Jobscript property) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.submission.jobscript.Jobscript property) scheduler_args (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) scheduler_job_ID (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) scheduler_js_ref (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) scheduler_lookup (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) scheduler_name (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) scheduler_ref (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) schedulers (hpcflow.sdk.persistence.base.PersistentStoreFeatures attribute) SchedulerVersionsFailure schema_parameters (hpcflow.app.Element property) (hpcflow.app.ElementIteration property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.persistence.base.StoreElementIter attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter attribute) SchemaInput (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) SchemaOutput (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) SchemaParameter (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) schemas (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) scope (hpcflow.app.ActionEnvironment attribute) (hpcflow.sdk.core.actions.ActionEnvironment attribute) scratch (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) script (hpcflow.app.InputFileGenerator attribute) (hpcflow.app.OutputFileParser attribute) (hpcflow.sdk.core.command_files.InputFileGenerator attribute) (hpcflow.sdk.core.command_files.OutputFileParser attribute) scripts (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) search_dir_files_by_regex() (in module hpcflow.sdk.core.utils) sentry_DSN (hpcflow.sdk.config.config.ConfigOptions attribute) sentry_env (hpcflow.sdk.config.config.ConfigOptions attribute) sentry_traces_sample_rate (hpcflow.sdk.config.config.ConfigOptions attribute) sentry_wrap() (in module hpcflow.sdk.core.utils) seq_idx (hpcflow.sdk.persistence.base.StoreElement attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElement attribute) sequence_idx (hpcflow.app.Element property) (hpcflow.sdk.core.element.Element property) set() (hpcflow.sdk.config.config.Config method) set_callback_file_paths() (in module hpcflow.sdk.config.callbacks) set_data() (hpcflow.sdk.persistence.base.StoreParameter method) (hpcflow.sdk.persistence.zarr.ZarrStoreParameter method) set_defaults() (hpcflow.app.ElementResources method) (hpcflow.sdk.core.element.ElementResources method) set_EAR_end() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) set_EAR_skip() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) set_EAR_start() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) set_EAR_submission_index() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) set_EARs_initialised() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.base.StoreElementIter method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) set_file() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.base.StoreParameter method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrStoreParameter method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) set_in_container() (in module hpcflow.sdk.core.utils) set_inactive_in_known_subs_file() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) set_jobscript_metadata() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) set_parameter_value() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) set_sequence_parameters() (hpcflow.app.Task method) (hpcflow.sdk.core.task.Task method) SGE_parallel_env (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) SGEPosix (class in hpcflow.app) (class in hpcflow.sdk.submission.schedulers.sge) SHARED (hpcflow.sdk.core.parameters.ParallelMode attribute) shared_data_name (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) shared_data_primary_key (hpcflow.sdk.core.json_like.ChildObjectSpec attribute) shebang_executable (hpcflow.sdk.submission.shells.base.Shell property) (hpcflow.sdk.submission.shells.bash.Bash property) (hpcflow.sdk.submission.shells.bash.WSLBash property) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell property) Shell (class in hpcflow.sdk.submission.shells.base) shell (hpcflow.app.ElementResources attribute) (hpcflow.app.Jobscript property) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.submission.jobscript.Jobscript property) shell_args (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) SHELL_NAME hpcflow-submission-shell-info command line option shell_name (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) show() (in module hpcflow.app) show_all_EAR_statuses() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method)

show_legend() (in module hpcflow.app) single_label (hpcflow.app.SchemaInput property) (hpcflow.sdk.core.parameters.SchemaInput property) single_labelled_data (hpcflow.app.SchemaInput property) (hpcflow.sdk.core.parameters.SchemaInput property) single_labelled_type (hpcflow.app.SchemaInput property) (hpcflow.sdk.core.parameters.SchemaInput property) Singleton (class in hpcflow.sdk.app) (class in hpcflow.sdk.core.utils) size() (hpcflow.sdk.core.utils.JSONLikeDirSnapShot method) skip (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) skipped (hpcflow.sdk.core.actions.EARStatus attribute) SLURM_is_parallel (hpcflow.app.ElementResources property) (hpcflow.sdk.core.element.ElementResources property) SLURM_num_cpus_per_task (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) SLURM_num_nodes (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) SLURM_num_tasks (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) SLURM_num_tasks_per_node (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) SLURM_partition (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) SlurmPosix (class in hpcflow.app) (class in hpcflow.sdk.submission.schedulers.slurm) snapshot_end (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) snapshot_start (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) source (hpcflow.sdk.persistence.base.StoreParameter attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreParameter attribute) src_idx (hpcflow.sdk.persistence.base.StoreElement attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElement attribute) start (hpcflow.app.NumCores attribute) (hpcflow.sdk.core.environment.NumCores attribute) start_helper() (in module hpcflow.sdk.helper.helper) start_time (hpcflow.app.ElementActionRun property) (hpcflow.app.Jobscript property) (hpcflow.app.Submission property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.submission.Submission property) stat_info() (hpcflow.sdk.core.utils.JSONLikeDirSnapShot method) state_lookup (hpcflow.app.SGEPosix attribute) (hpcflow.app.SlurmPosix attribute) (hpcflow.sdk.submission.schedulers.sge.SGEPosix attribute) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix attribute) status (hpcflow.app.ElementActionRun property) (hpcflow.app.Submission property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.submission.submission.Submission property) stderr (hpcflow.app.Command attribute) (hpcflow.sdk.core.commands.Command attribute) stdin (hpcflow.app.Command attribute) (hpcflow.sdk.core.commands.Command attribute) stdout (hpcflow.app.Command attribute) (hpcflow.sdk.core.commands.Command attribute) stem (hpcflow.app.FileNameSpec property) (hpcflow.app.FileSpec property) (hpcflow.sdk.core.command_files.FileNameSpec property) (hpcflow.sdk.core.command_files.FileSpec property) step (hpcflow.app.NumCores attribute) (hpcflow.sdk.core.environment.NumCores attribute) stop (hpcflow.app.NumCores attribute) (hpcflow.sdk.core.environment.NumCores attribute) stop() (hpcflow.sdk.helper.watcher.MonitorController method) (hpcflow.sdk.helper.watcher.WorkflowMonitor method) stop_helper() (in module hpcflow.sdk.helper.helper) store_cls_from_str() (in module hpcflow.sdk.persistence) store_contents (hpcflow.app.InputFile property) (hpcflow.app.InputFileGeneratorSource property) (hpcflow.app.OutputFileParserSource property) (hpcflow.sdk.core.command_files.InputFile property) (hpcflow.sdk.core.command_files.InputFileGeneratorSource property) (hpcflow.sdk.core.command_files.OutputFileParserSource property) store_format (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) StoreEAR (class in hpcflow.sdk.persistence.base) StoreElement (class in hpcflow.sdk.persistence.base) StoreElementIter (class in hpcflow.sdk.persistence.base) StoreParameter (class in hpcflow.sdk.persistence.base) StoreResource (class in hpcflow.sdk.persistence.store_resource) StoreTask (class in hpcflow.sdk.persistence.base) SUB_IDX hpcflow-workflow-WORKFLOW_REF-sub command line option SUB_JS_IDX hpcflow-workflow-WORKFLOW_REF-wait command line option sub_parameters (hpcflow.app.Parameter attribute) (hpcflow.sdk.core.parameters.Parameter attribute) Submission (class in hpcflow.app) (class in hpcflow.sdk.submission.submission) submission (hpcflow.app.Jobscript property) (hpcflow.sdk.persistence.base.PersistentStoreFeatures attribute) (hpcflow.sdk.submission.jobscript.Jobscript property) SUBMISSION_IDX hpcflow-internal-workflow-PATH-launch-direct-win-js command line option hpcflow-internal-workflow-PATH-write-commands command line option submission_idx (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) submission_logger (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) submission_parts (hpcflow.app.Submission property) (hpcflow.sdk.submission.submission.Submission property) SubmissionFailure submissions (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) submissions_path (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) SubmissionStatus (class in hpcflow.sdk.submission.submission) submit() (hpcflow.app.Jobscript method) (hpcflow.app.Submission method) (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.submission.jobscript.Jobscript method) (hpcflow.sdk.submission.submission.Submission method) submit_cmdline (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) submit_hostname (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) submit_machine (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) submit_time (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) submit_workflow() (in module hpcflow.app) submitted (hpcflow.sdk.core.actions.EARStatus attribute) SUBMITTED (hpcflow.sdk.submission.submission.SubmissionStatus attribute) submitted_jobscripts (hpcflow.app.Submission property) (hpcflow.sdk.submission.submission.Submission property) SubParameter (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) success (hpcflow.app.ElementActionRun property) (hpcflow.sdk.core.actions.EARStatus attribute) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.persistence.base.StoreEAR attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR attribute) sys_base_prefix (hpcflow.sdk.runtime.RunTimeInfo attribute) sys_prefix (hpcflow.sdk.runtime.RunTimeInfo attribute)

T

take() (hpcflow.sdk.core.utils.JSONLikeDirSnapShot method) Task (class in hpcflow.app) (class in hpcflow.sdk.core.task) task (hpcflow.app.Element property) (hpcflow.app.ElementAction property) (hpcflow.app.ElementActionRun property) (hpcflow.app.ElementIteration property) (hpcflow.app.ElementParameter attribute) (hpcflow.app.ElementPropagation attribute) (hpcflow.app.Elements property) (hpcflow.app.ElementSet property) TASK (hpcflow.app.InputSourceType attribute) task (hpcflow.app.ParameterPath attribute) (hpcflow.app.Parameters attribute) (hpcflow.app.TaskInputParameters attribute) (hpcflow.app.TaskOutputParameters attribute) (hpcflow.sdk.core.actions.ElementAction property) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.core.element.ElementParameter attribute) (hpcflow.sdk.core.parameters.ParameterPath attribute) (hpcflow.sdk.core.task.ElementPropagation attribute) (hpcflow.sdk.core.task.Elements property) (hpcflow.sdk.core.task.ElementSet property) (hpcflow.sdk.core.task.Parameters attribute) (hpcflow.sdk.core.task.TaskInputParameters attribute) (hpcflow.sdk.core.task.TaskOutputParameters attribute) task() (hpcflow.app.InputSource class method) (hpcflow.sdk.core.parameters.InputSource class method) task_actions (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) task_artifacts_path (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) task_elements (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) task_ID (hpcflow.sdk.persistence.base.StoreElement attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreElement attribute) task_indices (hpcflow.app.WorkflowLoop property) (hpcflow.sdk.core.loop.WorkflowLoop property) task_insert_IDs (hpcflow.app.Jobscript property) (hpcflow.app.Loop property) (hpcflow.app.WorkflowLoop property) (hpcflow.sdk.core.loop.Loop property) (hpcflow.sdk.core.loop.WorkflowLoop property) (hpcflow.sdk.submission.jobscript.Jobscript property) task_loop_idx (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) task_objects (hpcflow.app.Loop property) (hpcflow.app.WorkflowLoop property) (hpcflow.sdk.core.loop.Loop property) (hpcflow.sdk.core.loop.WorkflowLoop property) task_schema (hpcflow.app.Action property) (hpcflow.app.SchemaInput property) (hpcflow.sdk.core.actions.Action property) (hpcflow.sdk.core.parameters.SchemaInput property) task_schemas (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) task_template (hpcflow.app.ElementSet property) (hpcflow.app.TaskSchema property) (hpcflow.sdk.core.task.ElementSet property) (hpcflow.sdk.core.task_schema.TaskSchema property) (hpcflow.sdk.persistence.base.StoreTask attribute) (hpcflow.sdk.persistence.zarr.ZarrStoreTask attribute) TaskInputParameters (class in hpcflow.app) (class in hpcflow.sdk.core.task) TaskList (class in hpcflow.app) (class in hpcflow.sdk.core.object_list) TaskObjective (class in hpcflow.app) (class in hpcflow.sdk.core.task_schema) TaskOutputParameters (class in hpcflow.app) (class in hpcflow.sdk.core.task) tasks (hpcflow.app.Workflow property) (hpcflow.app.WorkflowTemplate attribute) (hpcflow.sdk.core.workflow.Workflow property) (hpcflow.sdk.core.workflow.WorkflowTemplate attribute) TaskSchema (class in hpcflow.app) (class in hpcflow.sdk.core.task_schema) TaskSchemaMissingParameterError TaskSchemasList (class in hpcflow.app) (class in hpcflow.sdk.core.object_list) TaskSchemaSpecValidationError TaskSourceType (class in hpcflow.app) TaskTemplateInvalidNesting TaskTemplateList (class in hpcflow.app) (class in hpcflow.sdk.core.object_list) TaskTemplateMultipleInputValues TaskTemplateMultipleSchemaObjectives TaskTemplateUnexpectedInput TaskTemplateUnexpectedSequenceInput template (hpcflow.app.Workflow property) (hpcflow.app.WorkflowLoop property) (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.loop.WorkflowLoop property) (hpcflow.sdk.core.task.WorkflowTask property) (hpcflow.sdk.core.workflow.Workflow property) template_components (hpcflow.app.Workflow property) (hpcflow.sdk.app.App property) (hpcflow.sdk.app.BaseApp property) (hpcflow.sdk.core.workflow.Workflow property) template_components_from_json_like() (hpcflow.sdk.app.App method) (hpcflow.sdk.app.BaseApp method) TEMPLATE_FILE_OR_STR hpcflow-go command line option hpcflow-make command line option temporary_rename() (hpcflow.app.Workflow class method) (hpcflow.sdk.core.workflow.Workflow class method) test() (hpcflow.app.ElementFilter method) (hpcflow.sdk.core.element.ElementFilter method) test_action_rule() (hpcflow.app.WorkflowTask method) (hpcflow.sdk.core.task.WorkflowTask method) time_limit (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) timedelta_format() (in module hpcflow.sdk.submission.submission) timedelta_parse() (in module hpcflow.sdk.submission.submission) to_dict() (hpcflow.app.Action method) (hpcflow.app.ActionEnvironment method) (hpcflow.app.ActionRule method) (hpcflow.app.ActionScope method) (hpcflow.app.Command method) (hpcflow.app.CommandFilesList method) (hpcflow.app.ElementGroup method) (hpcflow.app.ElementResources method) (hpcflow.app.ElementSet method) (hpcflow.app.Environment method) (hpcflow.app.EnvironmentsList method) (hpcflow.app.Executable method) (hpcflow.app.ExecutableInstance method) (hpcflow.app.ExecutablesList method) (hpcflow.app.FileNameExt method) (hpcflow.app.FileNameSpec method) (hpcflow.app.FileNameStem method) (hpcflow.app.FileSpec method) (hpcflow.app.GroupList method) (hpcflow.app.InputFile method) (hpcflow.app.InputFileGenerator method) (hpcflow.app.InputFileGeneratorSource method) (hpcflow.app.InputSource method) (hpcflow.app.InputValue method) (hpcflow.app.Jobscript method) (hpcflow.app.Loop method) (hpcflow.app.NumCores method) (hpcflow.app.OutputFileParser method) (hpcflow.app.OutputFileParserSource method) (hpcflow.app.OutputLabel method) (hpcflow.app.Parameter method) (hpcflow.app.ParameterPath method) (hpcflow.app.ParametersList method) (hpcflow.app.ParameterValue method) (hpcflow.app.ResourceList method) (hpcflow.app.ResourceSpec method) (hpcflow.app.SchemaInput method) (hpcflow.app.SchemaOutput method) (hpcflow.app.SchemaParameter method) (hpcflow.app.Submission method) (hpcflow.app.Task method) (hpcflow.app.TaskList method) (hpcflow.app.TaskObjective method) (hpcflow.app.TaskSchema method) (hpcflow.app.TaskSchemasList method) (hpcflow.app.TaskTemplateList method) (hpcflow.app.ValuePerturbation method) (hpcflow.app.ValueSequence method) (hpcflow.app.WorkflowLoopList method) (hpcflow.app.WorkflowTaskList method) (hpcflow.app.WorkflowTemplate method) (hpcflow.sdk.core.actions.Action method) (hpcflow.sdk.core.actions.ActionEnvironment method) (hpcflow.sdk.core.actions.ActionRule method) (hpcflow.sdk.core.actions.ActionScope method) (hpcflow.sdk.core.command_files.FileNameExt method) (hpcflow.sdk.core.command_files.FileNameSpec method) (hpcflow.sdk.core.command_files.FileNameStem method) (hpcflow.sdk.core.command_files.FileSpec method) (hpcflow.sdk.core.command_files.InputFile method) (hpcflow.sdk.core.command_files.InputFileGenerator method) (hpcflow.sdk.core.command_files.InputFileGeneratorSource method) (hpcflow.sdk.core.command_files.OutputFileParser method) (hpcflow.sdk.core.command_files.OutputFileParserSource method) (hpcflow.sdk.core.commands.Command method) (hpcflow.sdk.core.element.ElementGroup method) (hpcflow.sdk.core.element.ElementResources method) (hpcflow.sdk.core.environment.Environment method) (hpcflow.sdk.core.environment.Executable method) (hpcflow.sdk.core.environment.ExecutableInstance method) (hpcflow.sdk.core.environment.NumCores method) (hpcflow.sdk.core.json_like.BaseJSONLike method) (hpcflow.sdk.core.json_like.JSONLike method) (hpcflow.sdk.core.loop.Loop method) (hpcflow.sdk.core.object_list.AppDataList method) (hpcflow.sdk.core.object_list.CommandFilesList method) (hpcflow.sdk.core.object_list.DotAccessObjectList method) (hpcflow.sdk.core.object_list.EnvironmentsList method) (hpcflow.sdk.core.object_list.ExecutablesList method) (hpcflow.sdk.core.object_list.GroupList method) (hpcflow.sdk.core.object_list.ObjectList method) (hpcflow.sdk.core.object_list.ParametersList method) (hpcflow.sdk.core.object_list.ResourceList method) (hpcflow.sdk.core.object_list.TaskList method) (hpcflow.sdk.core.object_list.TaskSchemasList method) (hpcflow.sdk.core.object_list.TaskTemplateList method) (hpcflow.sdk.core.object_list.WorkflowLoopList method) (hpcflow.sdk.core.object_list.WorkflowTaskList method) (hpcflow.sdk.core.parameters.AbstractInputValue method) (hpcflow.sdk.core.parameters.InputSource method) (hpcflow.sdk.core.parameters.InputValue method) (hpcflow.sdk.core.parameters.Parameter method) (hpcflow.sdk.core.parameters.ParameterPath method) (hpcflow.sdk.core.parameters.ParameterValue method) (hpcflow.sdk.core.parameters.ResourceSpec method) (hpcflow.sdk.core.parameters.SchemaInput method) (hpcflow.sdk.core.parameters.SchemaOutput method) (hpcflow.sdk.core.parameters.SchemaParameter method) (hpcflow.sdk.core.parameters.ValuePerturbation method) (hpcflow.sdk.core.parameters.ValueSequence method) (hpcflow.sdk.core.task.ElementSet method) (hpcflow.sdk.core.task.OutputLabel method) (hpcflow.sdk.core.task.Task method) (hpcflow.sdk.core.task_schema.TaskObjective method) (hpcflow.sdk.core.task_schema.TaskSchema method) (hpcflow.sdk.core.test_utils.P1_parameter_cls method) (hpcflow.sdk.core.workflow.WorkflowTemplate method) (hpcflow.sdk.core.zarr_io.ZarrEncodable method) (hpcflow.sdk.persistence.base.StoreEAR method) (hpcflow.sdk.persistence.base.StoreElement method) (hpcflow.sdk.persistence.base.StoreElementIter method) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR method) (hpcflow.sdk.persistence.zarr.ZarrStoreElement method) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter method) (hpcflow.sdk.submission.jobscript.Jobscript method) (hpcflow.sdk.submission.submission.Submission method)

to_element_set_data() (hpcflow.app.Element method) (hpcflow.sdk.core.element.Element method) to_json_like() (hpcflow.app.Action method) (hpcflow.app.ActionEnvironment method) (hpcflow.app.ActionRule method) (hpcflow.app.ActionScope method) (hpcflow.app.Command method) (hpcflow.app.CommandFilesList method) (hpcflow.app.ElementFilter method) (hpcflow.app.ElementGroup method) (hpcflow.app.ElementResources method) (hpcflow.app.ElementSet method) (hpcflow.app.Environment method) (hpcflow.app.EnvironmentsList method) (hpcflow.app.Executable method) (hpcflow.app.ExecutableInstance method) (hpcflow.app.ExecutablesList method) (hpcflow.app.FileNameExt method) (hpcflow.app.FileNameSpec method) (hpcflow.app.FileNameStem method) (hpcflow.app.FileSpec method) (hpcflow.app.GroupList method) (hpcflow.app.InputFile method) (hpcflow.app.InputFileGenerator method) (hpcflow.app.InputFileGeneratorSource method) (hpcflow.app.InputSource method) (hpcflow.app.InputValue method) (hpcflow.app.Jobscript method) (hpcflow.app.Loop method) (hpcflow.app.NumCores method) (hpcflow.app.OutputFileParser method) (hpcflow.app.OutputFileParserSource method) (hpcflow.app.OutputLabel method) (hpcflow.app.Parameter method) (hpcflow.app.ParameterPath method) (hpcflow.app.ParametersList method) (hpcflow.app.ResourceList method) (hpcflow.app.ResourceSpec method) (hpcflow.app.SchemaInput method) (hpcflow.app.SchemaOutput method) (hpcflow.app.SchemaParameter method) (hpcflow.app.Submission method) (hpcflow.app.Task method) (hpcflow.app.TaskList method) (hpcflow.app.TaskObjective method) (hpcflow.app.TaskSchema method) (hpcflow.app.TaskSchemasList method) (hpcflow.app.TaskTemplateList method) (hpcflow.app.ValuePerturbation method) (hpcflow.app.ValueSequence method) (hpcflow.app.WorkflowLoopList method) (hpcflow.app.WorkflowTaskList method) (hpcflow.app.WorkflowTemplate method) (hpcflow.sdk.core.actions.Action method) (hpcflow.sdk.core.actions.ActionEnvironment method) (hpcflow.sdk.core.actions.ActionRule method) (hpcflow.sdk.core.actions.ActionScope method) (hpcflow.sdk.core.command_files.FileNameExt method) (hpcflow.sdk.core.command_files.FileNameSpec method) (hpcflow.sdk.core.command_files.FileNameStem method) (hpcflow.sdk.core.command_files.FileSpec method) (hpcflow.sdk.core.command_files.InputFile method) (hpcflow.sdk.core.command_files.InputFileGenerator method) (hpcflow.sdk.core.command_files.InputFileGeneratorSource method) (hpcflow.sdk.core.command_files.OutputFileParser method) (hpcflow.sdk.core.command_files.OutputFileParserSource method) (hpcflow.sdk.core.commands.Command method) (hpcflow.sdk.core.element.ElementFilter method) (hpcflow.sdk.core.element.ElementGroup method) (hpcflow.sdk.core.element.ElementResources method) (hpcflow.sdk.core.environment.Environment method) (hpcflow.sdk.core.environment.Executable method) (hpcflow.sdk.core.environment.ExecutableInstance method) (hpcflow.sdk.core.environment.NumCores method) (hpcflow.sdk.core.json_like.BaseJSONLike method) (hpcflow.sdk.core.json_like.JSONLike method) (hpcflow.sdk.core.loop.Loop method) (hpcflow.sdk.core.object_list.AppDataList method) (hpcflow.sdk.core.object_list.CommandFilesList method) (hpcflow.sdk.core.object_list.DotAccessObjectList method) (hpcflow.sdk.core.object_list.EnvironmentsList method) (hpcflow.sdk.core.object_list.ExecutablesList method) (hpcflow.sdk.core.object_list.GroupList method) (hpcflow.sdk.core.object_list.ObjectList method) (hpcflow.sdk.core.object_list.ParametersList method) (hpcflow.sdk.core.object_list.ResourceList method) (hpcflow.sdk.core.object_list.TaskList method) (hpcflow.sdk.core.object_list.TaskSchemasList method) (hpcflow.sdk.core.object_list.TaskTemplateList method) (hpcflow.sdk.core.object_list.WorkflowLoopList method) (hpcflow.sdk.core.object_list.WorkflowTaskList method) (hpcflow.sdk.core.parameters.AbstractInputValue method) (hpcflow.sdk.core.parameters.InputSource method) (hpcflow.sdk.core.parameters.InputValue method) (hpcflow.sdk.core.parameters.Parameter method) (hpcflow.sdk.core.parameters.ParameterPath method) (hpcflow.sdk.core.parameters.ResourceSpec method) (hpcflow.sdk.core.parameters.SchemaInput method) (hpcflow.sdk.core.parameters.SchemaOutput method) (hpcflow.sdk.core.parameters.SchemaParameter method) (hpcflow.sdk.core.parameters.ValuePerturbation method) (hpcflow.sdk.core.parameters.ValueSequence method) (hpcflow.sdk.core.task.ElementSet method) (hpcflow.sdk.core.task.OutputLabel method) (hpcflow.sdk.core.task.Task method) (hpcflow.sdk.core.task_schema.TaskObjective method) (hpcflow.sdk.core.task_schema.TaskSchema method) (hpcflow.sdk.core.utils.JSONLikeDirSnapShot method) (hpcflow.sdk.core.workflow.WorkflowTemplate method) (hpcflow.sdk.submission.jobscript.Jobscript method) (hpcflow.sdk.submission.submission.Submission method) (in module hpcflow.sdk.core.json_like) to_persistent() (hpcflow.app.Task method) (hpcflow.sdk.core.task.Task method) to_string() (hpcflow.app.ActionScope method) (hpcflow.app.InputSource method) (hpcflow.sdk.config.config.Config method) (hpcflow.sdk.core.actions.ActionScope method) (hpcflow.sdk.core.parameters.InputSource method) to_zarr() (hpcflow.sdk.core.zarr_io.ZarrEncodable method) to_zip() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) ToJSONLikeChildReferenceError ts_fmt (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) (hpcflow.sdk.persistence.base.PersistentStore property) (hpcflow.sdk.persistence.json.JSONPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore property) ts_name_fmt (hpcflow.app.Workflow property) (hpcflow.sdk.core.workflow.Workflow property) typ (hpcflow.app.Parameter attribute) (hpcflow.app.SchemaInput property) (hpcflow.app.SchemaOutput property) (hpcflow.app.SchemaParameter property) (hpcflow.sdk.core.parameters.Parameter attribute) (hpcflow.sdk.core.parameters.SchemaInput property) (hpcflow.sdk.core.parameters.SchemaOutput property) (hpcflow.sdk.core.parameters.SchemaParameter property)

U

undefined_input_types (hpcflow.app.ElementSet property) (hpcflow.app.Task property) (hpcflow.sdk.core.task.ElementSet property) (hpcflow.sdk.core.task.Task property) undefined_inputs (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) unique_name (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.task.WorkflowTask property) universal_input_types (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) UnknownResourceSpecItemError UnknownSGEPEError UnknownSLURMPartitionError UnrequiredInputSources unset() (hpcflow.sdk.config.config.Config method) UnsetParameterDataError unsourced_inputs (hpcflow.app.Task property) (hpcflow.sdk.core.task.Task property) UnsupportedOSError UnsupportedSchedulerError UnsupportedShellError update() (hpcflow.sdk.config.config.Config method) (hpcflow.sdk.persistence.base.StoreEAR method) (hpcflow.sdk.persistence.zarr.ZarrStoreEAR method)

update_console_level() (hpcflow.sdk.log.AppLog method) update_loop_idx() (hpcflow.sdk.persistence.base.StoreElementIter method) (hpcflow.sdk.persistence.zarr.ZarrStoreElementIter method) update_loop_num_iters() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) update_param_source() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method) update_source() (hpcflow.sdk.persistence.base.StoreParameter method) (hpcflow.sdk.persistence.zarr.ZarrStoreParameter method) update_workflow_paths() (hpcflow.sdk.helper.watcher.WorkflowMonitor method) upstream_tasks (hpcflow.app.WorkflowTask property) (hpcflow.sdk.core.task.WorkflowTask property) use_job_array (hpcflow.app.ElementResources attribute) (hpcflow.app.ResourceSpec property) (hpcflow.sdk.core.element.ElementResources attribute) (hpcflow.sdk.core.parameters.ResourceSpec property) using_resource() (hpcflow.sdk.persistence.base.PersistentStore method) (hpcflow.sdk.persistence.json.JSONPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore method)

V

validate_against_machine() (hpcflow.app.ElementResources method) (hpcflow.sdk.core.element.ElementResources method) VALUE hpcflow-config-append command line option hpcflow-config-prepend command line option hpcflow-config-set command line option hpcflow-config-update command line option hpcflow-internal-workflow-PATH-save-parameter command line option value (hpcflow.app.ElementParameter property) (hpcflow.app.InputValue property) (hpcflow.app.ValuePerturbation property) (hpcflow.sdk.core.element.ElementParameter property) (hpcflow.sdk.core.parameters.AbstractInputValue property) (hpcflow.sdk.core.parameters.InputValue property) (hpcflow.sdk.core.parameters.ValuePerturbation property) value() (hpcflow.app.FileNameExt method) (hpcflow.app.FileNameSpec method) (hpcflow.app.FileNameStem method) (hpcflow.app.FileSpec method) (hpcflow.sdk.core.command_files.FileNameExt method) (hpcflow.sdk.core.command_files.FileNameSpec method) (hpcflow.sdk.core.command_files.FileNameStem method) (hpcflow.sdk.core.command_files.FileSpec method)

ValuePerturbation (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) values (hpcflow.app.ValueSequence property) (hpcflow.sdk.core.parameters.ValueSequence property) ValuesAlreadyPersistentError ValueSequence (class in hpcflow.app) (class in hpcflow.sdk.core.parameters) variables (hpcflow.app.Command attribute) (hpcflow.sdk.core.commands.Command attribute) version_info (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property)

W

wait() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) wait_for_jobscripts() (hpcflow.app.DirectPosix class method) (hpcflow.app.DirectWindows class method) (hpcflow.app.SGEPosix method) (hpcflow.app.SlurmPosix method) (hpcflow.sdk.submission.schedulers.direct.DirectPosix class method) (hpcflow.sdk.submission.schedulers.direct.DirectScheduler class method) (hpcflow.sdk.submission.schedulers.direct.DirectWindows class method) (hpcflow.sdk.submission.schedulers.Scheduler method) (hpcflow.sdk.submission.schedulers.sge.SGEPosix method) (hpcflow.sdk.submission.schedulers.slurm.SlurmPosix method) waiting (hpcflow.sdk.submission.jobscript_info.JobscriptElementState attribute) walk() (hpcflow.sdk.core.utils.JSONLikeDirSnapShot method) warning_formatter() (in module hpcflow.sdk.config.cli) where (hpcflow.app.ElementGroup attribute) (hpcflow.app.ElementRepeats attribute) (hpcflow.sdk.core.element.ElementGroup attribute) (hpcflow.sdk.core.element.ElementRepeats attribute) where_pending() (hpcflow.sdk.persistence.pending.PendingChanges method) WindowsPowerShell (class in hpcflow.sdk.submission.shells.powershell) Workflow (class in hpcflow.app) (class in hpcflow.sdk.core.workflow) workflow (hpcflow.app.Element property) (hpcflow.app.ElementActionRun property) (hpcflow.app.ElementIteration property) (hpcflow.app.InputFile property) (hpcflow.app.InputFileGeneratorSource property) (hpcflow.app.InputValue property) (hpcflow.app.Jobscript property) (hpcflow.app.OutputFileParserSource property) (hpcflow.app.ResourceSpec property) (hpcflow.app.Submission property) (hpcflow.app.ValuePerturbation property) (hpcflow.app.ValueSequence property) (hpcflow.app.WorkflowLoop property) (hpcflow.app.WorkflowTask property) (hpcflow.app.WorkflowTemplate attribute) (hpcflow.sdk.core.actions.ElementActionRun property) (hpcflow.sdk.core.command_files.InputFile property) (hpcflow.sdk.core.command_files.InputFileGeneratorSource property) (hpcflow.sdk.core.command_files.OutputFileParserSource property) (hpcflow.sdk.core.element.Element property) (hpcflow.sdk.core.element.ElementIteration property) (hpcflow.sdk.core.loop.WorkflowLoop property) (hpcflow.sdk.core.parameters.AbstractInputValue property) (hpcflow.sdk.core.parameters.InputValue property) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.parameters.ValuePerturbation property) (hpcflow.sdk.core.parameters.ValueSequence property) (hpcflow.sdk.core.task.WorkflowTask property) (hpcflow.sdk.core.workflow.WorkflowTemplate attribute) (hpcflow.sdk.submission.jobscript.Jobscript property) (hpcflow.sdk.submission.submission.Submission property)

workflow_app_alias (hpcflow.app.Jobscript property) (hpcflow.sdk.submission.jobscript.Jobscript property) WORKFLOW_REF hpcflow-cancel command line option hpcflow-open-workflow command line option hpcflow-workflow command line option hpcflow-zip command line option workflow_template (hpcflow.app.Loop property) (hpcflow.app.ResourceList property) (hpcflow.app.ResourceSpec property) (hpcflow.app.WorkflowBlueprint attribute) (hpcflow.sdk.core.loop.Loop property) (hpcflow.sdk.core.object_list.ResourceList property) (hpcflow.sdk.core.parameters.ResourceSpec property) (hpcflow.sdk.core.workflow.WorkflowBlueprint attribute) WorkflowBatchUpdateFailedError WorkflowBlueprint (class in hpcflow.app) (class in hpcflow.sdk.core.workflow) WorkflowLimitsError WorkflowLoop (class in hpcflow.app) (class in hpcflow.sdk.core.loop) WorkflowLoopList (class in hpcflow.app) (class in hpcflow.sdk.core.object_list) WorkflowMonitor (class in hpcflow.sdk.helper.watcher) WorkflowNotFoundError WorkflowParameterMissingError WorkflowSpecValidationError WorkflowSubmissionFailure WorkflowTask (class in hpcflow.app) (class in hpcflow.sdk.core.task) WorkflowTaskList (class in hpcflow.app) (class in hpcflow.sdk.core.object_list) WorkflowTemplate (class in hpcflow.app) (class in hpcflow.sdk.core.workflow) wrap_in_subshell() (hpcflow.sdk.submission.shells.bash.Bash method) (hpcflow.sdk.submission.shells.bash.WSLBash method) (hpcflow.sdk.submission.shells.powershell.WindowsPowerShell method) write_commands() (hpcflow.app.Workflow method) (hpcflow.sdk.core.workflow.Workflow method) write_EAR_ID_file() (hpcflow.app.Jobscript method) (hpcflow.sdk.submission.jobscript.Jobscript method) write_element_run_dir_file() (hpcflow.app.Jobscript method) (hpcflow.sdk.submission.jobscript.Jobscript method) write_empty_workflow() (hpcflow.sdk.persistence.json.JSONPersistentStore class method) (hpcflow.sdk.persistence.zarr.ZarrPersistentStore class method) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore class method) write_jobscript() (hpcflow.app.Jobscript method) (hpcflow.sdk.submission.jobscript.Jobscript method) write_source() (hpcflow.app.ElementActionRun method) (hpcflow.app.InputFileGenerator method) (hpcflow.app.OutputFileParser method) (hpcflow.sdk.core.actions.ElementActionRun method) (hpcflow.sdk.core.command_files.InputFileGenerator method) (hpcflow.sdk.core.command_files.OutputFileParser method) WSLBash (class in hpcflow.sdk.submission.shells.bash)

Z

zarr_decode() (in module hpcflow.sdk.core.zarr_io) zarr_encode() (in module hpcflow.sdk.core.zarr_io) zarr_store (hpcflow.sdk.persistence.zarr.ZarrPersistentStore property) (hpcflow.sdk.persistence.zarr.ZarrZipPersistentStore property) ZarrAttrsStoreResource (class in hpcflow.sdk.persistence.store_resource) ZarrEncodable (class in hpcflow.sdk.core.zarr_io)

ZarrPersistentStore (class in hpcflow.sdk.persistence.zarr) ZarrStoreEAR (class in hpcflow.sdk.persistence.zarr) ZarrStoreElement (class in hpcflow.sdk.persistence.zarr) ZarrStoreElementIter (class in hpcflow.sdk.persistence.zarr) ZarrStoreParameter (class in hpcflow.sdk.persistence.zarr) ZarrStoreTask (class in hpcflow.sdk.persistence.zarr) ZarrZipPersistentStore (class in hpcflow.sdk.persistence.zarr)