Index

A

AbstractInputValue (class in hpcflow.parameters) Action (class in hpcflow.actions) ActionCondition (class in hpcflow.actions) ActionEnvironment (class in hpcflow.actions) actions (hpcflow.task_schema.TaskSchema attribute) ActionScope (class in hpcflow.actions) ActionScopeType (class in hpcflow.actions) add_group() (hpcflow.task.TaskTemplate method) add_object() (hpcflow.object_list.DotAccessObjectList method) add_submission() (hpcflow.workflow.Workflow method) add_task() (hpcflow.workflow.WorkflowTemplate method)

add_task_after() (hpcflow.workflow.WorkflowTemplate method) add_task_before() (hpcflow.workflow.WorkflowTemplate method) additive_factor (hpcflow.parameters.ValuePerturbation attribute) address (hpcflow.parameters.SubParameter attribute) ALL (hpcflow.actions.ActionScopeType attribute) all_schema_input_types (hpcflow.task.TaskTemplate property) all_schema_inputs (hpcflow.task.TaskTemplate property) all_schema_output_types (hpcflow.task.TaskTemplate property) all_schema_outputs (hpcflow.task.TaskTemplate property) AppLog (class in hpcflow.app_log) arguments (hpcflow.commands.Command attribute)

B

BuiltinSchemaParameter (class in hpcflow.parameters)

C

check_address_exists() (hpcflow.parameters.ValueSequence method) check_valid_py_identifier() (in module hpcflow.utils) classproperty (class in hpcflow.utils) Command (class in hpcflow.commands) command (hpcflow.commands.Command attribute) (hpcflow.environment.ExecutableInstance attribute) CommandArgument (class in hpcflow.commands)

commands (hpcflow.actions.CommandsAction attribute) CommandsAction (class in hpcflow.actions) condition (hpcflow.actions.ActionCondition attribute) (hpcflow.element.ElementFilter attribute) (hpcflow.loop.StoppingCriterion attribute) conditions (hpcflow.actions.ResolvedAction attribute) Config (class in hpcflow.config) CREATE (hpcflow.core.WorkflowInteraction attribute)

D

DEFAULT_LOG_FILE_PATH (hpcflow.app_log.AppLog attribute) DEFAULT_LOG_LEVEL_CONSOLE (hpcflow.app_log.AppLog attribute) DEFAULT_LOG_LEVEL_FILE (hpcflow.app_log.AppLog attribute) default_value (hpcflow.parameters.SchemaInput attribute)

defined_input_types (hpcflow.task.TaskTemplate property) description (hpcflow.hpcflow.HPCFlowApp attribute) DotAccessObjectList (class in hpcflow.object_list) DuplicateExecutableError

E

Element (class in hpcflow.element) (class in hpcflow.typing_stubs) element_indices (hpcflow.task.Task property) ElementFilter (class in hpcflow.element) ElementGroup (class in hpcflow.element) ElementRepeats (class in hpcflow.element) ensure_input_sources() (hpcflow.workflow.WorkflowTemplate method) Environment (class in hpcflow.environment) environment (hpcflow.actions.ActionEnvironment attribute) (hpcflow.actions.ResolvedAction attribute) (hpcflow.command_files.InputFileGenerator attribute) (hpcflow.command_files.OutputFileParser attribute) (hpcflow.environment.Executable attribute)

EnvironmentSpecValidationError Executable (class in hpcflow.environment) ExecutableInstance (class in hpcflow.environment) executables (hpcflow.environment.Environment attribute) ExecutablesList (class in hpcflow.object_list) EXPLICIT (hpcflow.parameters.ParameterPropagationMode attribute)

F

file_name (hpcflow.command_files.FileNameExt attribute) (hpcflow.command_files.FileNameStem attribute) FileNameExt (class in hpcflow.command_files) FileNameSpec (class in hpcflow.command_files) FileNameStem (class in hpcflow.command_files) FileSpec (class in hpcflow.command_files) filter_instances() (hpcflow.environment.Executable method) from_linear_space() (hpcflow.parameters.ValueSequence class method) from_range() (hpcflow.parameters.ValueSequence class method) from_spec() (hpcflow.actions.Action class method) (hpcflow.actions.ActionEnvironment class method) (hpcflow.command_files.FileNameSpec class method) (hpcflow.command_files.FileSpec class method) (hpcflow.command_files.InputFileGenerator class method) (hpcflow.command_files.OutputFileParser class method) (hpcflow.commands.Command class method) (hpcflow.element.ElementFilter class method) (hpcflow.environment.Environment class method) (hpcflow.environment.Executable class method) (hpcflow.environment.ExecutableInstance class method) (hpcflow.parameters.InputSource class method) (hpcflow.parameters.InputValue class method) (hpcflow.parameters.Parameter class method) (hpcflow.parameters.SchemaInput class method) (hpcflow.parameters.SchemaParameter class method) (hpcflow.parameters.ValuePerturbation class method) (hpcflow.parameters.ValueSequence class method) (hpcflow.task.TaskTemplate class method) (hpcflow.task_schema.TaskSchema class method) (hpcflow.workflow.WorkflowTemplate class method)

G

get_activate_env_command() (hpcflow.runtime.RunTimeInfo method) get_child_logger() (hpcflow.app_log.AppLog method) get_commands_action_env() (hpcflow.actions.Action method) get_config_file() (hpcflow.config.Config static method) get_deactivate_env_command() (hpcflow.runtime.RunTimeInfo method) get_duplicate_items() (in module hpcflow.utils) get_environment_spec_schema() (in module hpcflow.spec_parse) get_environments() (in module hpcflow.spec_parse) get_in_container() (in module hpcflow.utils) get_input_file_generator_action_env() (hpcflow.actions.Action method) get_input_multiplicities() (hpcflow.task.TaskTemplate method) get_input_value() (hpcflow.workflow.WorkflowTemplate method) get_input_values() (hpcflow.workflow.WorkflowTemplate method) get_non_sub_parameter_input_values() (hpcflow.task.TaskTemplate method) get_output_file_parser_action_env() (hpcflow.actions.Action method)

get_parameter_dependence() (hpcflow.actions.Action method) (hpcflow.task_schema.TaskSchema method) get_possible_input_sources() (hpcflow.workflow.WorkflowTemplate method) get_relative_path() (in module hpcflow.utils) get_resolved_action_env() (hpcflow.actions.Action method) get_sub_parameter_input_values() (hpcflow.task.TaskTemplate method) get_task_schema_spec_schema() (in module hpcflow.spec_parse) get_task_schemas_and_parameters() (in module hpcflow.spec_parse) get_time_stamp() (in module hpcflow.utils) get_workflow_spec_schema() (in module hpcflow.spec_parse) group (hpcflow.parameters.SchemaInput attribute) group_by_dict_key_values() (in module hpcflow.utils) group_by_distinct (hpcflow.element.ElementGroup attribute) GroupList (class in hpcflow.object_list) groups (hpcflow.task.TaskTemplate property)

H

hpcflow module hpcflow.actions module hpcflow.api module hpcflow.app_log module hpcflow.cli module hpcflow.command_files module hpcflow.commands module hpcflow.config module hpcflow.core module hpcflow.data module hpcflow.element module hpcflow.environment module hpcflow.errors module hpcflow.gui module

hpcflow.hpcflow module hpcflow.loop module hpcflow.object_list module hpcflow.parameters module hpcflow.runtime module hpcflow.server module hpcflow.spec_parse module hpcflow.spec_schema module hpcflow.task module hpcflow.task_schema module hpcflow.typing_stubs module hpcflow.utils module hpcflow.workflow module HPCFlowApp (class in hpcflow.hpcflow)

I

implementation (hpcflow.task_schema.TaskSchema attribute) IMPLICIT (hpcflow.parameters.ParameterPropagationMode attribute) imports_ref (hpcflow.parameters.InputSource property) index (hpcflow.task.Task property) index() (in module hpcflow.object_list) input_file (hpcflow.command_files.InputFileGenerator attribute) INPUT_FILE_GENERATOR (hpcflow.actions.ActionScopeType attribute) input_file_generator (hpcflow.actions.InputFileGeneratorAction attribute) input_file_generator() (hpcflow.actions.ActionScope class method) input_file_generator_sources (hpcflow.task.TaskTemplate property) input_files (hpcflow.task.TaskTemplate property) input_or_output (hpcflow.parameters.SchemaInput property) (hpcflow.parameters.SchemaOutput property) input_sources (hpcflow.task.TaskTemplate property) input_types (hpcflow.task_schema.TaskSchema property) InputFile (class in hpcflow.command_files)

InputFileGenerator (class in hpcflow.command_files) InputFileGeneratorAction (class in hpcflow.actions) InputFileGeneratorSource (class in hpcflow.command_files) inputs (hpcflow.command_files.InputFileGenerator attribute) (hpcflow.command_files.OutputFileParser attribute) (hpcflow.element.Element attribute) (hpcflow.task.TaskTemplate property) (hpcflow.task_schema.TaskSchema attribute) InputSource (class in hpcflow.parameters) InputSourceValidationError InputValue (class in hpcflow.parameters) (class in hpcflow.typing_stubs) InputValueDuplicateSequenceAddress instances (hpcflow.environment.Executable attribute) InvalidIdentifier is_file (hpcflow.parameters.Parameter attribute) is_sub_value (hpcflow.parameters.InputValue property)

K

kwargs (hpcflow.actions.ActionScope attribute)

L

label (hpcflow.command_files.FileSpec attribute) (hpcflow.environment.Executable attribute)

Loop (class in hpcflow.loop)

M

MAIN (hpcflow.actions.ActionScopeType attribute) main() (hpcflow.actions.ActionScope class method) make_CLI() (hpcflow.hpcflow.HPCFlowApp method) make_workflow() (hpcflow.workflow.WorkflowTemplate method) (in module hpcflow.api) (in module hpcflow.core) make_workflow_id() (in module hpcflow.utils) maximum_iterations (hpcflow.loop.Loop attribute) method (hpcflow.task_schema.TaskSchema attribute) MissingActionEnvironment MissingActionsError MissingCompatibleActionEnvironment MissingInputs module hpcflow hpcflow.actions hpcflow.api hpcflow.app_log hpcflow.cli hpcflow.command_files hpcflow.commands hpcflow.config hpcflow.core hpcflow.data hpcflow.element hpcflow.environment hpcflow.errors hpcflow.gui hpcflow.hpcflow hpcflow.loop hpcflow.object_list hpcflow.parameters hpcflow.runtime hpcflow.server hpcflow.spec_parse hpcflow.spec_schema hpcflow.task hpcflow.task_schema hpcflow.typing_stubs hpcflow.utils hpcflow.workflow

multiplicative_factor (hpcflow.parameters.ValuePerturbation attribute)

N

name (hpcflow.command_files.FileSpec attribute) (hpcflow.element.ElementGroup attribute) (hpcflow.environment.Environment attribute) (hpcflow.hpcflow.HPCFlowApp attribute) (hpcflow.parameters.SchemaParameter property) (hpcflow.parameters.ValuePerturbation attribute) (hpcflow.task.TaskTemplate property) (hpcflow.task_schema.TaskObjective attribute)

nesting_order (hpcflow.parameters.ValueSequence attribute) (hpcflow.task.TaskTemplate property) NEVER (hpcflow.parameters.ParameterPropagationMode attribute) non_universal_input_types (hpcflow.task.TaskTemplate property) num_cores (hpcflow.environment.ExecutableInstance attribute) num_elements (hpcflow.task.Task property) number (hpcflow.element.ElementRepeats attribute) NumCores (class in hpcflow.environment)

O

objective (hpcflow.task.TaskTemplate property) (hpcflow.task_schema.TaskSchema attribute) options (hpcflow.command_files.OutputFileParser attribute) output (hpcflow.command_files.OutputFileParser attribute) OUTPUT_FILE_PARSER (hpcflow.actions.ActionScopeType attribute) output_file_parser (hpcflow.actions.OutputFileParserAction attribute) output_file_parser() (hpcflow.actions.ActionScope class method)

output_file_parser_sources (hpcflow.task.TaskTemplate property) output_files (hpcflow.command_files.OutputFileParser attribute) output_types (hpcflow.task_schema.TaskSchema property) OutputFileParser (class in hpcflow.command_files) OutputFileParserAction (class in hpcflow.actions) OutputFileParserSource (class in hpcflow.command_files) outputs (hpcflow.element.Element attribute) (hpcflow.task_schema.TaskSchema attribute)

P

parallel_mode (hpcflow.environment.ExecutableInstance attribute) Parameter (class in hpcflow.parameters) (class in hpcflow.typing_stubs) parameter (hpcflow.loop.Loop attribute) (hpcflow.loop.StoppingCriterion attribute) (hpcflow.parameters.InputValue attribute) (hpcflow.parameters.SchemaInput attribute) (hpcflow.parameters.SchemaOutput attribute) (hpcflow.parameters.SubParameter attribute) parameter_path (hpcflow.element.ElementFilter attribute) ParameterPath (class in hpcflow.parameters) (class in hpcflow.typing_stubs) ParameterPropagationMode (class in hpcflow.parameters) parse_YAML_spec_file() (in module hpcflow.spec_parse)

parse_YAML_spec_str() (in module hpcflow.spec_parse) parts (hpcflow.commands.CommandArgument attribute), [1] path (hpcflow.actions.ActionCondition attribute) (hpcflow.parameters.InputValue attribute) (hpcflow.parameters.ParameterPath attribute) (hpcflow.parameters.ValuePerturbation attribute) (hpcflow.parameters.ValueSequence attribute) perturbations (hpcflow.task.TaskTemplate property) PrettyPrinter (class in hpcflow.utils) PROCESSING (hpcflow.actions.ActionScopeType attribute) processing() (hpcflow.actions.ActionScope class method) propagation_mode (hpcflow.parameters.SchemaInput attribute) (hpcflow.parameters.SchemaOutput attribute) provides_parameters (hpcflow.task.TaskTemplate property) (hpcflow.task_schema.TaskSchema property)

R

remove_task() (hpcflow.workflow.WorkflowTemplate method) rename() (hpcflow.workflow.Workflow method) repeats (hpcflow.task.TaskTemplate property) resolve_actions() (hpcflow.actions.Action method) resolve_config_dir() (hpcflow.config.Config static method)

resolve_initial_elements() (hpcflow.workflow.WorkflowTemplate static method) ResolvedAction (class in hpcflow.actions) resources (hpcflow.task.TaskTemplate property) ResourceSpec (class in hpcflow.parameters) run_time_info_callback() (in module hpcflow.cli) RunTimeInfo (class in hpcflow.runtime)

S

SchemaInput (class in hpcflow.parameters) SchemaOutput (class in hpcflow.parameters) SchemaParameter (class in hpcflow.parameters) schemas (hpcflow.task.TaskTemplate property) scope (hpcflow.actions.ActionEnvironment attribute) search_dir_files_by_regex() (in module hpcflow.utils) sequences (hpcflow.task.TaskTemplate property) set_config() (hpcflow.config.Config static method) set_in_container() (in module hpcflow.utils) setup (hpcflow.environment.Environment attribute) source (hpcflow.parameters.InputSource attribute) source_type (hpcflow.parameters.InputSource property)

start (hpcflow.environment.NumCores attribute) stderr (hpcflow.commands.Command attribute) stdin (hpcflow.commands.Command attribute) stdout (hpcflow.commands.Command attribute) step (hpcflow.environment.NumCores attribute) stop (hpcflow.environment.NumCores attribute) stopping_criteria (hpcflow.loop.Loop attribute) StoppingCriterion (class in hpcflow.loop) sub_parameters (hpcflow.parameters.Parameter attribute) SubParameter (class in hpcflow.parameters) (class in hpcflow.typing_stubs) sys_base_prefix (hpcflow.runtime.RunTimeInfo attribute) sys_prefix (hpcflow.runtime.RunTimeInfo attribute)

T

Task (class in hpcflow.core) (class in hpcflow.task) (class in hpcflow.typing_stubs) task (hpcflow.element.Element attribute) (hpcflow.parameters.ParameterPath attribute) task_ref (hpcflow.parameters.InputSource property) task_source_type (hpcflow.parameters.InputSource property) TaskList (class in hpcflow.object_list) TaskObjective (class in hpcflow.task_schema) tasks (hpcflow.workflow.Workflow attribute) TaskSchema (class in hpcflow.core) (class in hpcflow.task_schema) (class in hpcflow.typing_stubs)

TaskSchemaSpecValidationError TaskTemplate (class in hpcflow.task) (class in hpcflow.typing_stubs) TaskTemplateInvalidNesting TaskTemplateMultipleInputValues TaskTemplateMultipleSchemaObjectives TaskTemplateUnexpectedInput template (hpcflow.task.Task property) typ (hpcflow.actions.ActionScope attribute) (hpcflow.parameters.Parameter attribute) (hpcflow.parameters.SchemaParameter property)

U

undefined_input_types (hpcflow.task.TaskTemplate property) undefined_inputs (hpcflow.task.TaskTemplate property) unique_name (hpcflow.task.Task property)

universal_input_types (hpcflow.task.TaskTemplate property) unsourced_inputs (hpcflow.task.TaskTemplate property) update_handlers() (hpcflow.app_log.AppLog method)

V

validate() (hpcflow.parameters.InputSource method) value (hpcflow.parameters.InputValue attribute) value() (hpcflow.command_files.FileNameExt method) (hpcflow.command_files.FileNameSpec method) (hpcflow.command_files.FileNameStem method) (hpcflow.command_files.FileSpec method)

ValuePerturbation (class in hpcflow.parameters) values (hpcflow.parameters.ValueSequence attribute) ValueSequence (class in hpcflow.parameters) version (hpcflow.hpcflow.HPCFlowApp attribute)

W

where (hpcflow.element.ElementGroup attribute) (hpcflow.element.ElementRepeats attribute) (hpcflow.parameters.InputSource attribute) (hpcflow.parameters.SchemaInput attribute) Workflow (class in hpcflow.core) (class in hpcflow.typing_stubs) (class in hpcflow.workflow)

workflow (hpcflow.task.Task property) workflow_template (hpcflow.workflow.WorkflowBlueprint attribute) WorkflowBlueprint (class in hpcflow.workflow) WorkflowInteraction (class in hpcflow.core) WorkflowSpecValidationError WorkflowTemplate (class in hpcflow.typing_stubs) (class in hpcflow.workflow)